From 7723baa88fa4f365c01e9f0ee9551e278219d2e5 Mon Sep 17 00:00:00 2001 From: Ben Soares Date: Thu, 17 Nov 2022 09:39:38 +0000 Subject: [PATCH] JAL-4019 Clarification of position on 'X' in help text --- help/help/html/colourSchemes/index.html | 2 +- help/help/html/colourSchemes/nucleotideambiguity.html | 5 ++++- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/help/help/html/colourSchemes/index.html b/help/help/html/colourSchemes/index.html index 3b16d41..9ba0578 100755 --- a/help/help/html/colourSchemes/index.html +++ b/help/help/html/colourSchemes/index.html @@ -459,7 +459,7 @@ td { I X - + R Y diff --git a/help/help/html/colourSchemes/nucleotideambiguity.html b/help/help/html/colourSchemes/nucleotideambiguity.html index bf097cd..c1ab548 100755 --- a/help/help/html/colourSchemes/nucleotideambiguity.html +++ b/help/help/html/colourSchemes/nucleotideambiguity.html @@ -39,6 +39,9 @@ td {

This colour scheme was devised by Suzanne Duce and the Jalview Team to highlight ambiguity codes used in nucleotide sequences.

+

+ The use of X to represent an unknown base is acknowledged, but this is not recommended as the symbol refers to xanthine (see IUPAC-IUB Commission on Biochemical Nomenclature (CBN). Abbreviations and Symbols for Nucleic Acids, Polynucleotides and their Constituents.) +

@@ -67,7 +70,7 @@ td { - + -- 1.7.10.2
XXanthine (sometimes Unknown)Unknown (sometimes Xanthine)
R