From cd092aaf2104ed3651aa9ee80d0c24bb57dfae27 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 19 Sep 2005 12:49:14 +0000
Subject: [PATCH] ShowDistances, placeHolders and bootstraps have their own
 methods

---
 src/jalview/gui/TreePanel.java |   30 +++++++++++++++++++++++-------
 1 file changed, 23 insertions(+), 7 deletions(-)

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index c6c9b53..fea4704 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -75,8 +75,7 @@ public class TreePanel extends GTreePanel
       initTreePanel(av, seqVector, type, pwtype, s, e, null);
 
       // We know this tree has distances. JBPNote TODO: prolly should add this as a userdefined default
-      treeCanvas.setShowDistances(true);
-      distanceMenu.setSelected(true);
+      showDistances(true);
     }
 
     /**
@@ -148,11 +147,8 @@ public class TreePanel extends GTreePanel
         {
           // Must be outside run(), as Jalview2XML tries to
           // update distance/bootstrap visibility at the same time
-          treeCanvas.setShowBootstrap(newtree.HasBootstrap());
-          bootstrapMenu.setSelected(newtree.HasBootstrap());
-
-          treeCanvas.setShowDistances(newtree.HasDistances());
-          distanceMenu.setSelected(newtree.HasDistances());
+          showBootstrap(newtree.HasBootstrap());
+          showDistances(newtree.HasDistances());
         }
       }
 
@@ -172,6 +168,26 @@ public class TreePanel extends GTreePanel
       }
     }
 
+    public void showDistances(boolean b)
+    {
+      treeCanvas.setShowDistances(b);
+      distanceMenu.setSelected(b);
+    }
+
+    public void showBootstrap(boolean b)
+    {
+      treeCanvas.setShowBootstrap(b);
+      bootstrapMenu.setSelected(b);
+    }
+
+    public void showPlaceholders(boolean b)
+    {
+      placeholdersMenu.setState(b);
+      treeCanvas.setMarkPlaceholders(b);
+    }
+
+
+
 
     /**
      * DOCUMENT ME!
-- 
1.7.10.2