From ecef9bc6e3c5c651f2e03fe8fb6597b5dc3dcf05 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 27 Jan 2014 13:36:18 +0000
Subject: [PATCH] JAL-1430 mfa added as a known extension for FASTA files

---
 build.xml                               |    1 +
 src/jalview/io/AppletFormatAdapter.java |    4 ++--
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/build.xml b/build.xml
index 5a0ba13..70b7e29 100755
--- a/build.xml
+++ b/build.xml
@@ -350,6 +350,7 @@
     <!--
 				<association mime-type="application-x/ext-file" extensions="fa"/>
         <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="mfa"/>
         <association mime-type="application-x/ext-file" extensions="fastq"/>
         <association mime-type="application-x/ext-file" extensions="blc"/>
         <association mime-type="application-x/ext-file" extensions="msf"/>
diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 67d50ee..0a47a19 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -53,7 +53,7 @@ public class AppletFormatAdapter
    * that are writable by the application.
    */
   public static final String[] WRITABLE_EXTENSIONS = new String[]
-  { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa", "jar",
+  { "fa, fasta, mfa, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa", "jar",
       "sto,stk" };
 
   /**
@@ -69,7 +69,7 @@ public class AppletFormatAdapter
    * corresponding to READABLE_FNAMES
    */
   public static final String[] READABLE_EXTENSIONS = new String[]
-  { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa", "jar",
+  { "fa, fasta, mfa, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa", "jar",
       "sto,stk" }; // ,
 
   // ".blast"
-- 
1.7.10.2