From cd46ad8d4118e305b3cdf92ca8dc51cc9c354be7 Mon Sep 17 00:00:00 2001 From: Ben Soares Date: Tue, 21 Feb 2023 13:41:37 +0000 Subject: [PATCH] JAL-4088 Updated j8libs/*.jar in THIRDPARTYLIBS --- THIRDPARTYLIBS | 27 ++++++++++++--------------- 1 file changed, 12 insertions(+), 15 deletions(-) diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS index 72ff49e..3ec73d3 100644 --- a/THIRDPARTYLIBS +++ b/THIRDPARTYLIBS @@ -20,15 +20,18 @@ apache-mime4j-0.6.jar axis.jar biojava-core-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE biojava-ontology-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE -commons-codec-1.3.jar -commons-logging-1.1.1.jar +commons-codec-1.3.jar Apache license - https://www.apache.org/licenses/ +commons-discovery.jar Apache license - https://www.apache.org/licenses/ +commons-logging-1.1.1.jar Apache license - https://www.apache.org/licenses/ +flatlaf-3.0.jar Apache 2.0 License - https://www.formdev.com/flatlaf/#license +flatlaf-extras-3.0.jar Apache 2.0 License - https://www.formdev.com/flatlaf/#license getdown-core.jar Getdown license - https://github.com/threerings/getdown/blob/master/LICENSE -groovy-all-2.4.12-indy.jar APL 2.0 License - downloaded and extracted from https://dl.bintray.com/groovy/maven/apache-groovy-binary-2.4.6.zip -htsjdk-2.12.0.jar built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute +groovy-all-2.4.21-indy.jar APL 2.0 License - downloaded and extracted from https://dl.bintray.com/groovy/maven/apache-groovy-binary-2.4.6.zip +htsjdk-2.23.0.jar built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute httpclient-4.0.3.jar httpcore-4.0.1.jar httpmime-4.0.3.jar -intervalstore-v1.0.jar +intervalstore-v1.1.jar jabaws-min-client-NO_LOG4J-2.2.1.jar Apache license - pre-release of JABAWS 2.2.1 client built from https://source.jalview.org/crucible/changelog/jabaws?cs=586260b9f877e0954513fcffb0aa27eaddc5d0ff java-json.jar jaxrpc.jar @@ -42,27 +45,21 @@ jetty-util-9.2.10.v20150310.jar jfreesvg-2.1.jar GPL v3 licensed library from the JFree suite - http://www.jfree.org/jfreesvg/ JGoogleAnalytics_0.3.jar APL 2.0 License - http://code.google.com/p/jgoogleanalytics/ jhall.jar -Jmol-14.31.53.jar GPL/LGPLv2 built manually from commit https://github.com/BobHanson/Jmol-SwingJS/commit/a6a2fb767e3fc2a73e72d926a11fd93a0e4c9f23 (excluded jspecview/application to compile) +Jmol-NO_LOG4J-14.31.53.jar GPL/LGPLv2 built manually from commit https://github.com/BobHanson/Jmol-SwingJS/commit/a6a2fb767e3fc2a73e72d926a11fd93a0e4c9f23 (excluded jspecview/application to compile) json_simple-1.1.jar Apache 2.0 license - downloaded from https://code.google.com/p/json-simple/downloads/list (will move to 1.1.1 version when jalview is mavenised and osgi-ised) jsoup-1.8.1.jar jsr311-api-1.1.1.jar jswingreader-0.3.jar Apache license - built from http://jswingreader.sourceforge.net/ svn/trunk v12 -libquaqua64-8.0.jnilib.jar quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ -libquaqua-8.0.jnilib.jar quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ -log4j-1.2-api-2.16.0.jar Apache license version 2.0 -log4j-api-2.16.0.jar Apache license version 2.0 -log4j-core-2.16.0.jar Apache license version 2.0 -log4j-slf4j18-impl-2.16.0.jar Apache license version 2.0 +log4j-api-2.17.1.jar Apache license version 2.0 +log4j-core-2.17.1.jar Apache license version 2.0 +log4j-slf4j18-impl-2.17.1.jar Apache license version 2.0 mail.jar miglayout-4.0-swing.jar BSD - http://www.migcalendar.com/miglayout/versions/4.0/license.txt -quaqua-filechooser-only-8.0.jar quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ regex.jar saaj.jar servlet-api-3.1.jar slf4j-api-1.7.32.jar MIT license - https://opensource.org/licenses/mit-license.php -slf4j-log4j12-1.7.32.jar MIT license - https://opensource.org/licenses/mit-license.php vamsas-client.jar -VAqua5-patch.jar This is a patched version of VAqua v5 (latest stable) by Alan Snyder et al. GPLv3 with Classpath exception, also includes contributions from Quaqua: http://violetlib.org/vaqua/overview.html - see doc/patching-vaqua.txt for patch details, and http://issues.jalview.org/browse/JAL-2988 for details of the bug that the patch addresses. VARNAv3-93.jar GPL licenced software by K�vin Darty, Alain Denise and Yann Ponty - http://varna.lri.fr wsdl4j.jar xercesImpl.jar -- 1.7.10.2