From 2f72ea86efd420d86a3fee3f70b0bb54049c8fd9 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 28 Jan 2014 11:39:53 +0000 Subject: [PATCH] JAL-957 unsigned applet demo pages created with jbake --- examples/u_applets.html | 330 ++++++++++++++++++++++++++++++++++++++ examples/u_embedded.html | 224 ++++++++++++++++++++++++++ examples/u_embeddedWJmol.html | 297 ++++++++++++++++++++++++++++++++++ examples/u_formComplete.html | 246 ++++++++++++++++++++++++++++ examples/u_javascriptLaunch.html | 291 +++++++++++++++++++++++++++++++++ examples/u_linkedapplets_ng.html | 292 +++++++++++++++++++++++++++++++++ 6 files changed, 1680 insertions(+) create mode 100644 examples/u_applets.html create mode 100644 examples/u_embedded.html create mode 100644 examples/u_embeddedWJmol.html create mode 100644 examples/u_formComplete.html create mode 100644 examples/u_javascriptLaunch.html create mode 100644 examples/u_linkedapplets_ng.html diff --git a/examples/u_applets.html b/examples/u_applets.html new file mode 100644 index 0000000..c07b035 --- /dev/null +++ b/examples/u_applets.html @@ -0,0 +1,330 @@ + + + + JalviewLite Examples + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+ + + + +
+
+
+ Scary Java warnings ? Try the signed applet demos +
+
+ + + +

+

JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+
+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + +Displays a features file on the alignment
+ + + + + + + + + + + + + +Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
+

+

RF00031 RFAM Alignment with per sequence secondary + structure

+

+ + + + + +
+ + + + + + + + +Displays an RFAM RNA fold family with + secondary structure annotation
+
+ + + + +
+ +
+ + + + diff --git a/examples/u_embedded.html b/examples/u_embedded.html new file mode 100644 index 0000000..7e5a5ee --- /dev/null +++ b/examples/u_embedded.html @@ -0,0 +1,224 @@ + + + + Embedded Alignment + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+ + + + +
+
+
+ Scary Java warnings ? Try the signed applet demos +
+
+ + +

Embedded viewing of Alignments

+

The alignment below was generated from the following files: +

+ + + + + + + + + + + + +

+ + + + +
+ +
+ + + + diff --git a/examples/u_embeddedWJmol.html b/examples/u_embeddedWJmol.html new file mode 100644 index 0000000..b2976e1 --- /dev/null +++ b/examples/u_embeddedWJmol.html @@ -0,0 +1,297 @@ + + + + Jalview and Jmol + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+ + + + +
+
+
+ Scary Java warnings ? Try the signed applet demos +
+
+ + +

Structure and Alignment

+

This demo shows how JalviewLite and Jmol can be integrated with the JalviewLite javascript library.

+
+ + +
+ + + + +
+ +
+ + + + diff --git a/examples/u_formComplete.html b/examples/u_formComplete.html new file mode 100644 index 0000000..9f0d1fd --- /dev/null +++ b/examples/u_formComplete.html @@ -0,0 +1,246 @@ + + + + Access from Javascript + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+ + + + +
+
+
+ Scary Java warnings ? Try the signed applet demos +
+
+ + +

JalviewLite API Demo

+

Using the Javascript API to fill out forms using data from JalviewLite +
Click the Javascript buttons below to interact with the Applet +instance on the page.

+View the source in your browser to see how it has been done.
+View the full JalviewLite API documentation. + + + + + + + + + + + + + + + + +

+
+
Using the Jalview Applet for Input + to an HTML Form
+

+
+
+
+
Make a new View and Get and Set + Group Display List
+
+

+
+
+
+
+ + + + +
+ + + + + + diff --git a/examples/u_javascriptLaunch.html b/examples/u_javascriptLaunch.html new file mode 100644 index 0000000..c8a53d1 --- /dev/null +++ b/examples/u_javascriptLaunch.html @@ -0,0 +1,291 @@ + + + + Javascript Launch + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+ + + + +
+
+
+ Scary Java warnings ? Try the signed applet demos +
+
+ + + +
+ + + + + +

Javascript Launch Button

The button below demonstrates how JalviewLite can be launched via a javascript action.

+ + +
+ + + + +
+ +
+ + + + diff --git a/examples/u_linkedapplets_ng.html b/examples/u_linkedapplets_ng.html new file mode 100644 index 0000000..57f05dd --- /dev/null +++ b/examples/u_linkedapplets_ng.html @@ -0,0 +1,292 @@ + + + + Linked JalviewLite applets + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+ + + + +
+
+
+ Scary Java warnings ? Try the signed applet demos +
+
+ + + + + +

JalviewLite Linked Applets Demo

+

The two applets below use JalviewLite's javascript API to exchange events about the currently selected region and mouse position in the alignment. +

+ + +

+ +

+
+
+

+ + + + +
+ +
+ + + + -- 1.7.10.2