From a5eefc708b5f7aaedcd1640f944dd5b2851ea614 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 18 Feb 2014 16:30:34 +0000 Subject: [PATCH] clear out 2.8.0b1 what's new and add JAL-1445 to list of new features --- help/helpTOC.xml | 1 + help/html/whatsNew.html | 41 +++-------------------------------------- 2 files changed, 4 insertions(+), 38 deletions(-) diff --git a/help/helpTOC.xml b/help/helpTOC.xml index aa10130..c0e9b66 100755 --- a/help/helpTOC.xml +++ b/help/helpTOC.xml @@ -24,6 +24,7 @@ + diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 79cf7c9..55e94ef 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -22,51 +22,16 @@

- What's new ?
Jalview 2.8.0b1 is a bugfix - release for Jalview version 2.8.
As usual you can find the + What's new ?
Jalview 2.8.1 includes a range of new features developed in the last 12 months.
As usual you can find the highlights below, and the comprehensive list is given in the Jalview 2.8.0b1 Release Notes. + href="releases.html#Jalview2.8.1">Jalview 2.8.1 Release Notes.

-

- This bug fix release includes numerous minor enhancements made over - the last 12 months. Importantly, it is also the first release that - provides Jalview as a trusted application, signed with a certificate - donated to us by Certum. -

Enhancements and new features
    -
  • Allow disorder predictions to be made on the current - selection (or visible selection) in the same way that JPred works
    • -
  • allow import of data from gzipped files
    • -
  • Improved per-sequence 'colour-by-annotation' performance
    • -
  • Support '' style escaping of quotes in Newick files
    • -
  • group options for JABAWS service by command line name
    • -
  • Select primary source when selecting authority in database - fetcher GUI
    • -
  • COMBINE statement uses current SEQUENCE_REF and GROUP_REF - scope to group annotation rows
    • -
  • add .mfa to FASTA file extensions recognised by Jalview
    • -
  • groovy scripting for headless jalview operation
    • -
  • Output in Stockholm format
    • +
  • Extended the feature settings dialog to allow columns to be selected containing particular sequence features.
Bug fixes
    -
  • Uniprot and PDB database cross-reference fetching works - properly
    • -
  • 'View all structures' in the desktop is more reliable
    • -
  • Web services parameter dialog box shows the options enabled - for different presets
    • -
  • Interactive creation of RNA secondary structure works more - smoothly
    • -
  • Keyboard mode 'P' command jumps to the right place
    • -
  • Improved support for parsing database cross-references via - Stockholm and Rfam database
    • -
  • Improved semantics in annotation files for grouping - annotation rows associated with particular sequences and groups
    • -
  • More robust DNA->Amino acid translation
    • -
  • Improved Headless-mode operation for DAS annotation - retrieval, groovy script execution and alignment figure generation
    • -
  • annotation label tooltip text needs to be wrapped
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