From cf96462693b8944caaedf638a1a0099b339ccdb4 Mon Sep 17 00:00:00 2001 From: jprocter Date: Tue, 4 Sep 2012 17:18:56 +0100 Subject: [PATCH] JAL-975 note about black colouring bug --- help/html/colourSchemes/annotationColouring.html | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html index 3d40a3e..4847e71 100755 --- a/help/html/colourSchemes/annotationColouring.html +++ b/help/html/colourSchemes/annotationColouring.html @@ -46,6 +46,15 @@ Per-sequence associated annotation colouring was introduced in Jalview 2.8 +
  • If the "Use Original Colours" box is selected, the + colouring scheme will use the colouring scheme present on the + alignment before the Annotation Colour Settings window was displayed. +
    Please Note: If no colour scheme was + applied previously, then the colours for lines and labels at each + position in the annotation row will be used, for secondary structure + symbols and graphs, this may be black by default, so your alignment + will be coloured black. +
  • The colour scheme can display a colour gradient from a colour representing the minimum value in the selected annotation to a colour representing the maximum value in the selected annotation. Use the -- 1.7.10.2