Multiple Alignment Views

From fae06c045e2d5612012dddb916956ce306c8205e Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Tue, 28 Nov 2006 17:49:46 +0000 Subject: [PATCH] Close strong tag --- help/html/features/multipleViews.html | 116 ++++++++++++++++----------------- 1 file changed, 58 insertions(+), 58 deletions(-) diff --git a/help/html/features/multipleViews.html b/help/html/features/multipleViews.html index 1391a58..da811d4 100644 --- a/help/html/features/multipleViews.html +++ b/help/html/features/multipleViews.html @@ -1,58 +1,58 @@ - - -Multiple Alignment Views - - -

Multiple Alignment Views

-
Multiple alignment views allows the same alignment to be viewed -independently in many different ways simultaneously. Each view is an -independent visualization of the same alignment, so each may have a -different ordering, colouring, row and column hiding and seuqence -feature and annotation display setting, but alignment, feature and -annotation edits are common to all, since this affects the underlying -data.
-
Create a new view using the "View→New -View" menu item, or by pressing Control+T. A newly -created view will be identical to the view it was created from, but any -changes to the way the alignment is coloured or displayed will only -affect the new view.
-
A particular view may focus on some specific aspect of an -alignment - for example, hiding all but the region of an alignment -containing a particular domain. Right-clicking a view's -tab opens the View Name dialog box, allowing it to be renamed to -something more meaningful.
-
Viewing Multiple Views Simultaneously
-
Multiple views of an alignment are, by default, gathered together -as tabs within a single alignment window. They can be viewed -simultanously by pressing X (or via "View→Expand") -to expand each view into its own linked alignment window. Expanded views -are gathered back into into a single tabbed alignment window by pressing -G, or by selecting "View→Gather"). -
-
Hidden Sequence Representatives and Multiple -Views
-
There are some unexpected interactions between hidden sequence -representatives and their display in multiple views. See the -corresponding entry in the documentation -for hidden regions.
-
Structure and Analysis Viewers and Multiple -Views
-
A tree calculated on a particular view, or loaded onto it, is by -default associated with just that view. However, the Tree Viewer's "View→Associate -leaves" submenu allows a tree's view association to be changed to -to any or all other views.
-
The results of a PCA -calculation on a particular view may also be associated with other -views, using the PCA Viewer's "View→Associate -Nodes" submenu.
-
Currently, a PDB Structure Viewer -opened on a structure associated with a sequence in a particular view -will only be associated with the seuqence as displayed in that view.
-This will be resolved in a future release -
Multiple Views were introduced in Jalview 2.2
- - + + +Multiple Alignment Views + + +
Multiple Alignment Views
+
Multiple alignment views allows the same alignment to be viewed +independently in many different ways simultaneously. Each view is an +independent visualization of the same alignment, so each may have a +different ordering, colouring, row and column hiding and seuqence +feature and annotation display setting, but alignment, feature and +annotation edits are common to all, since this affects the underlying +data.
+
Create a new view using the "View→New +View" menu item, or by pressing Control+T. A newly +created view will be identical to the view it was created from, but any +changes to the way the alignment is coloured or displayed will only +affect the new view.
+
A particular view may focus on some specific aspect of an +alignment - for example, hiding all but the region of an alignment +containing a particular domain. Right-clicking a view's +tab opens the View Name dialog box, allowing it to be renamed to +something more meaningful.
+
Viewing Multiple Views Simultaneously
+
Multiple views of an alignment are, by default, gathered together +as tabs within a single alignment window. They can be viewed +simultanously by pressing X (or via "View→Expand") +to expand each view into its own linked alignment window. Expanded views +are gathered back into into a single tabbed alignment window by pressing +G, or by selecting "View→Gather"). +
+
Hidden Sequence Representatives and Multiple +Views
+
There are some unexpected interactions between hidden sequence +representatives and their display in multiple views. See the +corresponding entry in the documentation +for hidden regions.
+
Structure and Analysis Viewers and Multiple +Views
+
A tree calculated on a particular view, or loaded onto it, is by +default associated with just that view. However, the Tree Viewer's "View→Associate +leaves" submenu allows a tree's view association to be changed to +to any or all other views.
+
The results of a PCA +calculation on a particular view may also be associated with other +views, using the PCA Viewer's "View→Associate +Nodes" submenu.
+
Currently, a PDB Structure Viewer +opened on a structure associated with a sequence in a particular view +will only be associated with the seuqence as displayed in that view.
+This will be resolved in a future release +
Multiple Views were introduced in Jalview 2.2
+ + -- 1.7.10.2