From b528740d54b70ef784725aca3122eeceabcff8f9 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Thu, 18 Sep 2014 09:29:57 +0100 Subject: [PATCH] JAL-1544 it's --> its --- help/html/calculations/consensus.html | 2 +- help/html/calculations/structureconsensus.html | 2 +- help/html/features/groovy.html | 2 +- help/html/webServices/dbreffetcher.html | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html index 6df11da..bc42278 100644 --- a/help/html/calculations/consensus.html +++ b/help/html/calculations/consensus.html @@ -37,7 +37,7 @@ clipboard.

Sequence logo

By clicking on the label you can also activate the sequence logo. It indicates the relative amount of residues per column which can be - estimated by it's size in the logo. The tooltip of a column gives the + estimated by its size in the logo. The tooltip of a column gives the exact numbers for all occuring residues.
If columns of the alignment are very diverse, then it can sometimes be difficult to see the sequence logo - in this case, right diff --git a/help/html/calculations/structureconsensus.html b/help/html/calculations/structureconsensus.html index 097068d..6e797b1 100755 --- a/help/html/calculations/structureconsensus.html +++ b/help/html/calculations/structureconsensus.html @@ -40,7 +40,7 @@ similar to a sequence logo but counts the numbers of base pairs. There are two residues per column, the actual column and the interacting base. The opening bracket is always the one on the left side.
Like sequence logos the relative amount of a specific base pair can be -estimated by it's size in the logo. The tool tip of a column gives the +estimated by its size in the logo. The tool tip of a column gives the exact numbers for all occurring valid base pairs.

diff --git a/help/html/features/groovy.html b/help/html/features/groovy.html index 4185cc7..6559fd1 100644 --- a/help/html/features/groovy.html +++ b/help/html/features/groovy.html @@ -44,7 +44,7 @@ The jars are obtained from the embedded directory within the groovy distribution. The easiest way of adding them to the Jalview classpath - is to download and build jalview from it's source distribution, and + is to download and build jalview from its source distribution, and then add the groovy-all-*.jar to the lib directory whose path is given in the java.ext.dirs property.

diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html index 382991b..ad42153 100644 --- a/help/html/webServices/dbreffetcher.html +++ b/help/html/webServices/dbreffetcher.html @@ -45,7 +45,7 @@ of ID queries from the ID string of each sequence in the alignment. It then tries to query a subset of all the databases it can access in order to match the alignment sequence to any records retrieved from the database. If a match is found, then the sequence is annotated with that database's -reference, and any cross-references that it's records contain.

+reference, and any cross-references that its records contain.

The Sequence Identification Process
The method of accession id discovery is derived from the method which earlier Jalview versions used for Uniprot sequence feature retrieval, -- 1.7.10.2