From c29c0a190d8095d8a0c646a59447cadaa2a5af55 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Thu, 18 Aug 2005 17:58:57 +0000
Subject: [PATCH] typo fixes.

---
 help/html/menus/wsmenu.html       |    6 +++---
 help/html/webServices/index.html  |    2 +-
 help/html/webServices/jnet.html   |    5 +++--
 help/html/webServices/muscle.html |    4 ++--
 4 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html
index e2a9a4d..66f864c 100755
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -8,7 +8,7 @@
   on compute facilities at the University of Dundee. You need a continuous network 
   connection in order to use these services through Jalview. </em> </p>
 <ul>
-  <li><strong>Alignment </strong> 
+  <li><strong>Alignment</strong> 
     <ul>
       <li><strong>ClustalW Multiple Sequence Alignment</strong><br>
         <em> Submits all, or just the currently selected sequences for alignment 
@@ -36,8 +36,8 @@
         detection and prediction. </em></li>
       <li><em>If a set of sequences are selected, and they appear to be aligned, 
         then the alignment will be used for a Jnet prediction on the <strong>first</strong> 
-        sequence selected in the set (that is, the one that was first clicked 
-        on). </em> </li>
+        sequence in the set (that is, the one that appears first in
+        the alignment window). </em> </li>
     </ul>
   </li>
 </ul>
diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html
index d90fa85..22cb247 100755
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -31,7 +31,7 @@
                   diverse sets of sequences.
                   </li>
                   <li>JNet Secondary Structure Prediction<br>
-                  <em>This is a front end to the existing JNet www server.</em>
+                  This is a front end to the existing JNet www server.
                   </li>
                   </ul>
                   </p>
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 669110a..feefe77 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -15,8 +15,9 @@ most likely prediction via a jury network. <br>
 sequence alignment profiles to improve protein secondary
 structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li></ul>
 </p>
-The function available from the <strong>Web Service&#8594;JNet Secondary Structure 
-Prediction&#8594; </strong> menu does two different kinds of prediction, 
+The function available from the <strong>Web Service&#8594;Secondary
+Structure Prediction&#8594;JNet Secondary Structure 
+Prediction</strong> menu does two different kinds of prediction, 
 dependent upon the currently selected region:</p> 
 <ul>
 <li>If nothing is selected, and the displayed sequences appear to
diff --git a/help/html/webServices/muscle.html b/help/html/webServices/muscle.html
index 1ce576a..34da19c 100755
--- a/help/html/webServices/muscle.html
+++ b/help/html/webServices/muscle.html
@@ -8,7 +8,7 @@ Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high
 accuracy and high throughput<br>
 <em>Nucleic Acids Research</em> <strong>32</strong>(5), 1792-97.</p>
 <p> This alignment method is applied to the selected region, if any, or the whole 
-  sequence set when the <strong>Web Service&#8594;Secondary Structure Prediction&#8594;Muscle 
-  Alignment </strong>menu is selected. </p>
+  sequence set when the <strong>Web Service&#8594;Alignment&#8594;Muscle 
+  Protein Sequence Alignment</strong>menu item is selected. </p>
 </body>
 </html>
-- 
1.7.10.2