From 4367b86b1364ac33a25024d7564ba57310b93f21 Mon Sep 17 00:00:00 2001 From: jprocter Date: Mon, 14 Feb 2011 10:56:51 +0000 Subject: [PATCH] JAL-564 (annotation panel height adjustment) and alignment annotation popup menu items for JAL-759 --- src/jalview/appletgui/AnnotationLabels.java | 203 ++++++++++++++++++++------- 1 file changed, 150 insertions(+), 53 deletions(-) diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java index cef84cc..2344719 100755 --- a/src/jalview/appletgui/AnnotationLabels.java +++ b/src/jalview/appletgui/AnnotationLabels.java @@ -23,6 +23,7 @@ import java.awt.*; import java.awt.event.*; import java.awt.image.BufferedImage; + import jalview.datamodel.*; public class AnnotationLabels extends Panel implements ActionListener, @@ -67,31 +68,21 @@ public class AnnotationLabels extends Panel implements ActionListener, setLayout(null); /** - * this retrieves the adjustable height glyph from resources. we don't use it at the moment. - java.net.URL url = getClass().getResource("/images/idwidth.gif"); - Image temp = null; - - if (url != null) - { - temp = java.awt.Toolkit.getDefaultToolkit().createImage(url); - } - - try - { - MediaTracker mt = new MediaTracker(this); - mt.addImage(temp, 0); - mt.waitForID(0); - } catch (Exception ex) - { - } - - BufferedImage bi = new BufferedImage(temp.getHeight(this), - temp.getWidth(this), BufferedImage.TYPE_INT_RGB); - Graphics2D g = (Graphics2D) bi.getGraphics(); - g.rotate(Math.toRadians(90)); - g.drawImage(temp, 0, -bi.getWidth(this), this); - image = (Image) bi; -*/ + * this retrieves the adjustable height glyph from resources. we don't use + * it at the moment. java.net.URL url = + * getClass().getResource("/images/idwidth.gif"); Image temp = null; + * + * if (url != null) { temp = + * java.awt.Toolkit.getDefaultToolkit().createImage(url); } + * + * try { MediaTracker mt = new MediaTracker(this); mt.addImage(temp, 0); + * mt.waitForID(0); } catch (Exception ex) { } + * + * BufferedImage bi = new BufferedImage(temp.getHeight(this), + * temp.getWidth(this), BufferedImage.TYPE_INT_RGB); Graphics2D g = + * (Graphics2D) bi.getGraphics(); g.rotate(Math.toRadians(90)); + * g.drawImage(temp, 0, -bi.getWidth(this), this); image = (Image) bi; + */ addMouseListener(this); addMouseMotionListener(this); } @@ -232,7 +223,7 @@ public class AnnotationLabels extends Panel implements ActionListener, public void mouseMoved(MouseEvent evt) { - resizePanel = evt.getY() < 10; + resizePanel = evt.getY() < 10 && evt.getX() < 14; int row = getSelectedRow(evt.getY() + scrollOffset); @@ -266,25 +257,31 @@ public class AnnotationLabels extends Panel implements ActionListener, if (resizePanel) { - Dimension d = ap.annotationPanelHolder.getSize(),e = ap.annotationSpaceFillerHolder.getSize();; + Dimension d = ap.annotationPanelHolder.getSize(), e = ap.annotationSpaceFillerHolder + .getSize(), f = ap.seqPanelHolder.getSize(); int dif = evt.getY() - oldY; dif /= ap.av.charHeight; dif *= ap.av.charHeight; - if ((d.height - dif) > 20) + if ((d.height - dif) > 20 && (f.height + dif) > 20) { - - setSize(new Dimension(e.width,d.height-dif)); - ap.annotationSpaceFillerHolder.setSize(new Dimension(e.width, d.height - dif)); - ap.annotationPanelHolder.setSize(new Dimension(d.width, d.height - dif)); - ap.apvscroll.setValues(ap.apvscroll.getValue(), d.height-dif, 0, ap.annotationPanel.adjustPanelHeight(false)); - + ap.annotationPanel.setSize(d.width, d.height - dif); + setSize(new Dimension(e.width, d.height - dif)); + ap.annotationSpaceFillerHolder.setSize(new Dimension(e.width, + d.height - dif)); + ap.annotationPanelHolder.setSize(new Dimension(d.width, d.height + - dif)); + ap.apvscroll.setValues(ap.apvscroll.getValue(), d.height - dif, 0, + ap.annotationPanel.calcPanelHeight()); + f.height += dif; + ap.seqPanelHolder.setPreferredSize(f); + ap.setScrollValues(av.getStartRes(), av.getStartSeq()); ap.validate(); - //ap.paintAlignment(true); + // ap.paintAlignment(true); + ap.addNotify(); } - ap.addNotify(); } else { @@ -306,7 +303,7 @@ public class AnnotationLabels extends Panel implements ActionListener, public void mouseEntered(MouseEvent evt) { - if (evt.getY() < 10) + if (evt.getY() < 10 && evt.getX() < 14) { resizePanel = true; repaint(); @@ -333,6 +330,10 @@ public class AnnotationLabels extends Panel implements ActionListener, public void mousePressed(MouseEvent evt) { oldY = evt.getY(); + if (resizePanel) + { + return; + } // todo: move below to mouseClicked ? selectedRow = getSelectedRow(evt.getY() + scrollOffset); @@ -377,27 +378,123 @@ public class AnnotationLabels extends Panel implements ActionListener, item = new MenuItem(OUTPUT_TEXT); item.addActionListener(this); popup.add(item); - - if (aa[selectedRow] == ap.av.consensus) + if (selectedRow < aa.length) { - popup.addSeparator(); - final CheckboxMenuItem cbmi = new CheckboxMenuItem( - "Ignore Gaps In Consensus", ap.av.getIgnoreGapsConsensus()); - - cbmi.addItemListener(new ItemListener() + if (aa[selectedRow].autoCalculated) { - public void itemStateChanged(ItemEvent e) + if (aa[selectedRow].label.indexOf("Consensus") > -1) { - ap.av.setIgnoreGapsConsensus(cbmi.getState()); - ap.paintAlignment(true); + popup.addSeparator(); + final CheckboxMenuItem cbmi = new CheckboxMenuItem( + "Ignore Gaps In Consensus", + (aa[selectedRow].groupRef != null) ? aa[selectedRow].groupRef + .getIgnoreGapsConsensus() : ap.av + .getIgnoreGapsConsensus()); + final AlignmentAnnotation aaa = aa[selectedRow]; + cbmi.addItemListener(new ItemListener() + { + public void itemStateChanged(ItemEvent e) + { + if (aaa.groupRef != null) + { + // TODO: pass on reference to ap so the view can be updated. + aaa.groupRef.setIgnoreGapsConsensus(cbmi.getState()); + } + else + { + ap.av.setIgnoreGapsConsensus(cbmi.getState()); + } + ap.paintAlignment(true); + } + }); + popup.add(cbmi); + if (aaa.groupRef != null) + { + final CheckboxMenuItem chist = new CheckboxMenuItem( + "Show Group Histogram", + aa[selectedRow].groupRef.isShowConsensusHistogram()); + chist.addItemListener(new ItemListener() + { + public void itemStateChanged(ItemEvent e) + { + // TODO: pass on reference + // to ap + // so the + // view + // can be + // updated. + aaa.groupRef.setShowConsensusHistogram(chist.getState()); + ap.repaint(); + // ap.annotationPanel.paint(ap.annotationPanel.getGraphics()); + } + }); + popup.add(chist); + final CheckboxMenuItem cprofl = new CheckboxMenuItem( + "Show Group Logo", + aa[selectedRow].groupRef.isShowSequenceLogo()); + cprofl.addItemListener(new ItemListener() + { + public void itemStateChanged(ItemEvent e) + { + // TODO: pass on reference + // to ap + // so the + // view + // can be + // updated. + aaa.groupRef.setshowSequenceLogo(cprofl.getState()); + ap.repaint(); + // ap.annotationPanel.paint(ap.annotationPanel.getGraphics()); + } + }); + popup.add(cprofl); + } + else + { + final CheckboxMenuItem chist = new CheckboxMenuItem( + "Show Histogram", av.isShowConsensusHistogram()); + chist.addItemListener(new ItemListener() + { + public void itemStateChanged(ItemEvent e) + { + // TODO: pass on reference + // to ap + // so the + // view + // can be + // updated. + av.setShowConsensusHistogram(chist.getState()); + ap.repaint(); + // ap.annotationPanel.paint(ap.annotationPanel.getGraphics()); + } + }); + popup.add(chist); + final CheckboxMenuItem cprof = new CheckboxMenuItem( + "Show Logo", av.isShowSequenceLogo()); + cprof.addItemListener(new ItemListener() + { + public void itemStateChanged(ItemEvent e) + { + // TODO: pass on reference + // to ap + // so the + // view + // can be + // updated. + av.setShowSequenceLogo(cprof.getState()); + ap.repaint(); + // ap.annotationPanel.paint(ap.annotationPanel.getGraphics()); + } + }); + popup.add(cprof); + } + + item = new MenuItem(COPYCONS_SEQ); + item.addActionListener(this); + popup.add(item); } - }); - popup.add(cbmi); - item = new MenuItem(COPYCONS_SEQ); - item.addActionListener(this); - popup.add(item); + } } - popup.show(this, evt.getX(), evt.getY()); } else -- 1.7.10.2