From 49606a763a26d7e130b06078558f079603ea8bae Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 20 Nov 2006 18:07:58 +0000
Subject: [PATCH] look for current alignframe to search

---
 src/jalview/appletgui/Finder.java |    5 +++++
 src/jalview/gui/AlignFrame.java   |    6 +-----
 2 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java
index f44a90e..db46177 100755
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -123,6 +123,11 @@ public class Finder extends Panel implements ActionListener
 
   void doSearch(boolean findAll)
   {
+    if(jalview.bin.JalviewLite.currentAlignFrame!=null)
+    {
+      ap = jalview.bin.JalviewLite.currentAlignFrame.alignPanel;
+      av = ap.av;
+    }
     createNewGroup.setEnabled(false);
 
     String searchString = textfield.getText();
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 42934b9..6aceffc 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1708,11 +1708,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener
    */
   public void findMenuItem_actionPerformed(ActionEvent e)
   {
-    JInternalFrame frame = new JInternalFrame();
-    Finder finder = new Finder(viewport, alignPanel, frame);
-    frame.setContentPane(finder);
-    frame.setLayer(JLayeredPane.PALETTE_LAYER);
-    Desktop.addInternalFrame(frame, "Find", 340, 110);
+    new Finder();
   }
 
   public void newView_actionPerformed(ActionEvent e)
-- 
1.7.10.2