From f78ed026becc8e143d5b5953fce6c0961428d2a7 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 30 Jan 2007 13:39:53 +0000
Subject: [PATCH] Draw helices correctly

---
 src/jalview/appletgui/AnnotationPanel.java |    2 +-
 src/jalview/appletgui/SeqCanvas.java       |    2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index 01f2c23..10047fd 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -550,7 +550,7 @@ public class AnnotationPanel
                 else
                  {
                    g.fillRect(lastSSX, y + 4 + iconOffset,
-                              (x+1) * av.charWidth - lastSSX, 7);
+                              x * av.charWidth - lastSSX, 7);
                  }
                 break;
 
diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 3af9fb9..f36cc6a 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -405,7 +405,7 @@ public class SeqCanvas
     int endx;
     int ypos = hgap;
 
-    int maxwidth = av.alignment.getWidth();
+    int maxwidth = av.alignment.getWidth()-1;
 
     if(av.hasHiddenColumns)
           maxwidth = av.getColumnSelection().findColumnPosition(maxwidth)-1;
-- 
1.7.10.2