From 11ffb7d2f54adf39f052311528b2c1926286a61a Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 20 May 2005 13:28:20 +0000
Subject: [PATCH] look for startup file

---
 src/jalview/bin/Jalview.java |   18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 4ce1984..23c7547 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -120,6 +120,24 @@ public class Jalview extends JApplet
          frame.LoadFile(file, protocol, format);
      }
 
+     if(jalview.gui.Preferences.showStartupFile)
+     {
+       String file = jalview.gui.Preferences.startupFile;
+       String protocol = "File";
+       if (file.indexOf("http:") > -1)
+         protocol = "URL";
+
+       if(file.endsWith(".jar"))
+         Jalview2XML.LoadJalviewAlign(file);
+       else
+       {
+         String format = jalview.io.IdentifyFile.Identify(file, protocol);
+         frame.LoadFile(file, protocol, format);
+       }
+     }
+
+
+
    }
 
 }
-- 
1.7.10.2