From d7a7562c9108c21a5dbc32ed4895cf788b748574 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 21 Jun 2016 10:18:54 +0100 Subject: [PATCH] JAL-1369 make sure the fake AlignmentI produced by getFullAlignment retains the current reference sequence --- src/jalview/datamodel/HiddenSequences.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java index 0f57a02..db4c858 100755 --- a/src/jalview/datamodel/HiddenSequences.java +++ b/src/jalview/datamodel/HiddenSequences.java @@ -283,6 +283,7 @@ public class HiddenSequences fAlignmt.alignmentProperties = alignment.getProperties(); fAlignmt.groups = alignment.getGroups(); fAlignmt.hasRNAStructure = alignment.hasRNAStructure(); + fAlignmt.setSeqrep(alignment.getSeqrep()); return fAlignmt; } -- 1.7.10.2