From 1bfa17ca1d38ab5ec76846d65cb443bd007f20d0 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 13 Jul 2006 16:59:55 +0000
Subject: [PATCH] Sequence is private

---
 src/jalview/datamodel/Alignment.java |    6 +++---
 src/jalview/datamodel/Sequence.java  |    2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 070b927..5f0bf68 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -475,9 +475,9 @@ public class Alignment implements AlignmentI
         for (int i = 0; i < sequences.size(); i++)
         {
             Sequence seq = (Sequence) sequences.elementAt(i);
-            seq.sequence = seq.sequence.replace('.', gc);
-            seq.sequence = seq.sequence.replace('-', gc);
-            seq.sequence = seq.sequence.replace(' ', gc);
+            seq.setSequence( seq.getSequence().replace('.', gc) );
+            seq.setSequence( seq.getSequence().replace('-', gc) );
+            seq.setSequence( seq.getSequence().replace(' ', gc) );
         }
     }
 
diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 50b1e2b..0e52ea7 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -33,7 +33,7 @@ public class Sequence implements SequenceI
 {
     SequenceI datasetSequence;
     String name;
-    String sequence;
+    private String sequence;
     String description;
     int start;
     int end;
-- 
1.7.10.2