From 81f6049003ae41d3ce3950fa1e80599c7bb39896 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 17 Oct 2013 11:10:44 +0100
Subject: [PATCH] JAL-1397 make sure ColourschemeI instances are up to date
 after a new view is created

---
 src/jalview/gui/AlignFrame.java |    3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index e2fe90c..62fd29d 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -2538,7 +2538,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     newap.av.viewName = newViewName;
 
     addAlignmentPanel(newap, true);
-
+    newap.alignmentChanged();
+    
     if (alignPanels.size() == 2)
     {
       viewport.gatherViewsHere = true;
-- 
1.7.10.2