From 77785f8807cd04f7d41e64351b8289f5c543ad1a Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 27 Jul 2006 07:53:41 +0000
Subject: [PATCH] Readline instead of bit by bit

---
 src/jalview/gui/Jalview2XML.java |   11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 84e3564..300cbd5 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -824,14 +824,15 @@ public class Jalview2XML
         }
         while (!entry.getName().equals(pdbId));
 
-        DataInputStream in = new DataInputStream(jin);
+        BufferedReader in = new BufferedReader(new InputStreamReader(jin));
         File outFile = File.createTempFile("jalview_pdb", ".txt");
         outFile.deleteOnExit();
-        DataOutputStream out = new DataOutputStream(new FileOutputStream(outFile));
-        int data;
-        while ( (data = in.read()) != -1)
+        PrintWriter out = new PrintWriter(new FileOutputStream(outFile));
+        String data;
+
+        while ( (data = in.readLine()) != null)
         {
-          out.write(data);
+          out.println(data);
         }
         out.close();
         return outFile.getAbsolutePath();
-- 
1.7.10.2