From b618755c67d798ace34ebd6d0f384e913e8574c9 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Wed, 25 May 2005 16:41:15 +0000 Subject: [PATCH] c&p changed --- src/jalview/gui/Desktop.java | 2 +- src/jalview/gui/PopupMenu.java | 3 +-- src/jalview/io/SequenceFeatureFetcher.java | 3 +-- src/jalview/io/WSWUBlastClient.java | 4 +--- 4 files changed, 4 insertions(+), 8 deletions(-) diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java index 2753652..0548646 100755 --- a/src/jalview/gui/Desktop.java +++ b/src/jalview/gui/Desktop.java @@ -276,7 +276,7 @@ this.setDropTarget(new java.awt.dnd.DropTarget(desktop, this)); public void inputTextboxMenuItem_actionPerformed(ActionEvent e) { - CutAndPasteTransfer cap = new CutAndPasteTransfer(true); + CutAndPasteTransfer cap = new CutAndPasteTransfer(); int accept = JOptionPane.showInternalOptionDialog(Desktop.desktop, cap, "Cut & paste Alignment File", JOptionPane.YES_NO_CANCEL_OPTION, JOptionPane.PLAIN_MESSAGE, diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java index 8294469..d85fabc 100755 --- a/src/jalview/gui/PopupMenu.java +++ b/src/jalview/gui/PopupMenu.java @@ -525,9 +525,8 @@ public class PopupMenu extends JPopupMenu protected void analyze_actionPerformed(ActionEvent e) { - CutAndPasteTransfer cap = new CutAndPasteTransfer(false); + CutAndPasteTransfer cap = new CutAndPasteTransfer(); JInternalFrame frame = new JInternalFrame(); - cap.formatForOutput(); frame.setContentPane(cap); Desktop.addInternalFrame(frame, "Analyze this - ", 400, 300); SequenceGroup sg = getGroup(); diff --git a/src/jalview/io/SequenceFeatureFetcher.java b/src/jalview/io/SequenceFeatureFetcher.java index 7770ced..afe7b6e 100755 --- a/src/jalview/io/SequenceFeatureFetcher.java +++ b/src/jalview/io/SequenceFeatureFetcher.java @@ -13,7 +13,7 @@ public class SequenceFeatureFetcher implements Runnable AlignmentPanel ap; ArrayList unknownSequences; JInternalFrame outputFrame = new JInternalFrame(); - CutAndPasteTransfer output = new CutAndPasteTransfer(false); + CutAndPasteTransfer output = new CutAndPasteTransfer(); StringBuffer sbuffer = new StringBuffer(); public SequenceFeatureFetcher(AlignmentI align, AlignmentPanel ap) @@ -103,7 +103,6 @@ public class SequenceFeatureFetcher implements Runnable findMissingIds(align); if(sbuffer.length()>0) { - output.formatForOutput(); outputFrame.setContentPane(output); output.setText("Your sequences have been matched to Uniprot. Some of the ids have been\n" +"altered, most likely the start/end residue will have been updated.\n" diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java index ace3e0d..160d9f0 100755 --- a/src/jalview/io/WSWUBlastClient.java +++ b/src/jalview/io/WSWUBlastClient.java @@ -12,13 +12,11 @@ import java.awt.*; public class WSWUBlastClient { JInternalFrame outputFrame = new JInternalFrame(); - CutAndPasteTransfer output = new CutAndPasteTransfer(false); + CutAndPasteTransfer output = new CutAndPasteTransfer(); int jobsRunning = 0; public WSWUBlastClient(AlignmentI al, ArrayList ids) { - - output.formatForOutput(); outputFrame.setContentPane(output); output.setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered." +"\nIn order to display these features, try changing the names of your sequences to the ids suggested below."); -- 1.7.10.2