From 5640ec0623c6d1205e62f9fe15292f32bfdab7d9 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@dundee.ac.uk>
Date: Wed, 1 May 2024 16:15:15 +0100
Subject: [PATCH] JAL-4407 don't transfer 'local' settings - leave as default
 3d-structure annotation processing

---
 src/jalview/gui/AssociatePdbFileWithSeq.java |    4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/AssociatePdbFileWithSeq.java b/src/jalview/gui/AssociatePdbFileWithSeq.java
index c9951f5..b2689be 100644
--- a/src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/src/jalview/gui/AssociatePdbFileWithSeq.java
@@ -49,7 +49,7 @@ public class AssociatePdbFileWithSeq
           StructureSelectionManagerProvider ssmp)
   {
     return associatePdbWithSeq(choice, file, sequence, prompt, ssmp,
-            TFType.DEFAULT, null, true);
+            TFType.DEFAULT, null, false);
   }
 
   public PDBEntry associatePdbWithSeq(String choice, DataSourceType file,
@@ -97,9 +97,9 @@ public class AssociatePdbFileWithSeq
     {
       entry.setFile(choice);
       sequence.getDatasetSequence().addPDBId(entry);
+      entry.setStructureFile(pdbfile);
       StructureSelectionManager.getStructureSelectionManager(ssmp)
               .registerPDBEntry(entry);
-      entry.setStructureFile(pdbfile);
     }
     if (tft != null)
       entry.setProperty("TFType", tft.name());
-- 
1.7.10.2