From b96accb6a3904ea9b424f1dbd8b2b3b4164c521b Mon Sep 17 00:00:00 2001 From: gmungoc Date: Mon, 1 Feb 2016 12:53:46 +0000 Subject: [PATCH] JAL-1191 more terms added to SequenceOntologyLite --- src/jalview/io/gff/SequenceOntologyLite.java | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java index 173dea6..6719ae6 100644 --- a/src/jalview/io/gff/SequenceOntologyLite.java +++ b/src/jalview/io/gff/SequenceOntologyLite.java @@ -58,7 +58,18 @@ public class SequenceOntologyLite implements SequenceOntologyI * no sub-types of exon or CDS yet encountered; add if needed */ { "exon", "exon" }, - { "CDS", "CDS" } + { "CDS", "CDS" }, + + /* + * used in exonerate GFF + */ + { "protein_match", "protein_match"}, + { "nucleotide_match", "nucleotide_match"}, + + /* + * used in InterProScan GFF + */ + { "polypeptide", "polypeptide" } }; // @formatter:on -- 1.7.10.2