From 38c2f5336bb602570ab698985810b870fa7390de Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 14 Nov 2006 12:21:14 +0000
Subject: [PATCH] we already have c defined

---
 src/jalview/schemes/ScoreColourScheme.java |    4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index 8d7a45a..1f9116c 100755
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -94,12 +94,12 @@ public class ScoreColourScheme extends ResidueColourScheme
 
         char c = s.charAt(0);
 
-        if (jalview.util.Comparison.isGap((c)))
+        if (jalview.util.Comparison.isGap(c))
         {
             return Color.white;
         }
 
-        currentColour = colors[ ResidueProperties.aaIndex[s.charAt(0)] ];
+        currentColour = colors[ ResidueProperties.aaIndex[c] ];
 
         if(conservationColouring)
          applyConservation(j);
-- 
1.7.10.2