From 01cc9bf86a687fa7c8a741128264b23eb7feba9b Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 24 Feb 2006 11:47:51 +0000
Subject: [PATCH] Add Annotation to specific sequence

---
 src/jalview/ws/JPredClient.java |    5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/src/jalview/ws/JPredClient.java b/src/jalview/ws/JPredClient.java
index 798259a..6fd0a4a 100755
--- a/src/jalview/ws/JPredClient.java
+++ b/src/jalview/ws/JPredClient.java
@@ -439,6 +439,7 @@ public class JPredClient
           }
         }
 
+        al.setDataset(null);
 
         AlignmentAnnotation annot;
         Annotation[] annotations = null;
@@ -460,6 +461,8 @@ public class JPredClient
         // JBPNote Should also rename the query sequence sometime...
         i = 0;
 
+        SequenceI seqRef = al.getSequenceAt(FirstSeq);
+
         while (i < preds.length)
         {
           String id = preds[i].getName().toUpperCase();
@@ -512,7 +515,7 @@ public class JPredClient
                                               "JNet Output", annotations);
             }
 
-            al.addAnnotation(annot);
+            al.addAnnotation(annot, seqRef);
 
             if (noMsa)
             {
-- 
1.7.10.2