From f0a4a06301b7c7c4f103af39a10da7e0b3b4f084 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 20 Jun 2016 09:02:29 +0100
Subject: [PATCH] JAL-2110 List now used for AlignCodonFrame references

---
 src/jalview/ws/AWSThread.java |    7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/src/jalview/ws/AWSThread.java b/src/jalview/ws/AWSThread.java
index b158448..2ef5256 100644
--- a/src/jalview/ws/AWSThread.java
+++ b/src/jalview/ws/AWSThread.java
@@ -31,9 +31,8 @@ import jalview.gui.WebserviceInfo;
 import jalview.util.MessageManager;
 import jalview.viewmodel.seqfeatures.FeatureRendererSettings;
 
-import java.util.LinkedHashSet;
+import java.util.ArrayList;
 import java.util.List;
-import java.util.Set;
 
 public abstract class AWSThread extends Thread
 {
@@ -61,7 +60,7 @@ public abstract class AWSThread extends Thread
   /**
    * dataset sequence relationships to be propagated onto new results
    */
-  protected Set<AlignedCodonFrame> codonframe = null;
+  protected List<AlignedCodonFrame> codonframe = null;
 
   /**
    * are there jobs still running in this thread.
@@ -384,7 +383,7 @@ public abstract class AWSThread extends Thread
               .getCodonFrames();
       if (cf != null)
       {
-        codonframe = new LinkedHashSet<AlignedCodonFrame>();
+        codonframe = new ArrayList<AlignedCodonFrame>();
         codonframe.addAll(cf);
       }
     }
-- 
1.7.10.2