From 55d500f5b3e16b9903ceccd8f5f0e1fc65b7e0ab Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Sun, 22 May 2005 17:12:22 +0000
Subject: [PATCH] later version of client-side WSDL2Java generated simple
 Alignment container.

---
 src/vamsas/objects/simple/Alignment.java        |   41 ++---------------------
 src/vamsas/objects/simple/Alignment_Helper.java |    5 ---
 2 files changed, 2 insertions(+), 44 deletions(-)

diff --git a/src/vamsas/objects/simple/Alignment.java b/src/vamsas/objects/simple/Alignment.java
index 7328cbd..18fa20c 100755
--- a/src/vamsas/objects/simple/Alignment.java
+++ b/src/vamsas/objects/simple/Alignment.java
@@ -11,7 +11,6 @@ public class Alignment  extends vamsas.objects.simple.Object  implements java.io
     private java.lang.String gapchar;
     private java.lang.String[] method;
     private vamsas.objects.simple.SequenceSet seqs;
-    private vamsas.objects.simple.Sequence[] seqsAsArray;
 
     public Alignment() {
     }
@@ -19,12 +18,10 @@ public class Alignment  extends vamsas.objects.simple.Object  implements java.io
     public Alignment(
            java.lang.String gapchar,
            java.lang.String[] method,
-           vamsas.objects.simple.SequenceSet seqs,
-           vamsas.objects.simple.Sequence[] seqsAsArray) {
+           vamsas.objects.simple.SequenceSet seqs) {
            this.gapchar = gapchar;
            this.method = method;
            this.seqs = seqs;
-           this.seqsAsArray = seqsAsArray;
     }
 
 
@@ -87,26 +84,6 @@ public class Alignment  extends vamsas.objects.simple.Object  implements java.io
         this.seqs = seqs;
     }
 
-
-    /**
-     * Gets the seqsAsArray value for this Alignment.
-     * 
-     * @return seqsAsArray
-     */
-    public vamsas.objects.simple.Sequence[] getSeqsAsArray() {
-        return seqsAsArray;
-    }
-
-
-    /**
-     * Sets the seqsAsArray value for this Alignment.
-     * 
-     * @param seqsAsArray
-     */
-    public void setSeqsAsArray(vamsas.objects.simple.Sequence[] seqsAsArray) {
-        this.seqsAsArray = seqsAsArray;
-    }
-
     private java.lang.Object __equalsCalc = null;
     public synchronized boolean equals(java.lang.Object obj) {
         if (!(obj instanceof Alignment)) return false;
@@ -127,10 +104,7 @@ public class Alignment  extends vamsas.objects.simple.Object  implements java.io
               java.util.Arrays.equals(this.method, other.getMethod()))) &&
             ((this.seqs==null && other.getSeqs()==null) || 
              (this.seqs!=null &&
-              this.seqs.equals(other.getSeqs()))) &&
-            ((this.seqsAsArray==null && other.getSeqsAsArray()==null) || 
-             (this.seqsAsArray!=null &&
-              java.util.Arrays.equals(this.seqsAsArray, other.getSeqsAsArray())));
+              this.seqs.equals(other.getSeqs())));
         __equalsCalc = null;
         return _equals;
     }
@@ -159,17 +133,6 @@ public class Alignment  extends vamsas.objects.simple.Object  implements java.io
         if (getSeqs() != null) {
             _hashCode += getSeqs().hashCode();
         }
-        if (getSeqsAsArray() != null) {
-            for (int i=0;
-                 i<java.lang.reflect.Array.getLength(getSeqsAsArray());
-                 i++) {
-                java.lang.Object obj = java.lang.reflect.Array.get(getSeqsAsArray(), i);
-                if (obj != null &&
-                    !obj.getClass().isArray()) {
-                    _hashCode += obj.hashCode();
-                }
-            }
-        }
         __hashCodeCalc = false;
         return _hashCode;
     }
diff --git a/src/vamsas/objects/simple/Alignment_Helper.java b/src/vamsas/objects/simple/Alignment_Helper.java
index 1425a5a..5a54fe0 100755
--- a/src/vamsas/objects/simple/Alignment_Helper.java
+++ b/src/vamsas/objects/simple/Alignment_Helper.java
@@ -29,11 +29,6 @@ public class Alignment_Helper {
         elemField.setXmlName(new javax.xml.namespace.QName("", "seqs"));
         elemField.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet"));
         typeDesc.addFieldDesc(elemField);
-        elemField = new org.apache.axis.description.ElementDesc();
-        elemField.setFieldName("seqsAsArray");
-        elemField.setXmlName(new javax.xml.namespace.QName("", "seqsAsArray"));
-        elemField.setXmlType(new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"));
-        typeDesc.addFieldDesc(elemField);
     }
 
     /**
-- 
1.7.10.2