From 956deeb079bf76f9a0e9dc076154ff4865743e63 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Mon, 7 Nov 2016 15:39:46 +0000 Subject: [PATCH] JAL-1805 groups=Functional added where missing --- test/jalview/ext/htsjdk/TestHtsContigDb.java | 2 +- test/jalview/gui/AlignFrameTest.java | 2 +- test/jalview/gui/AppVarnaTest.java | 2 +- test/jalview/io/PfamFormatInputTest.java | 8 ++++---- 4 files changed, 7 insertions(+), 7 deletions(-) diff --git a/test/jalview/ext/htsjdk/TestHtsContigDb.java b/test/jalview/ext/htsjdk/TestHtsContigDb.java index f8c53b0..bdc14db 100644 --- a/test/jalview/ext/htsjdk/TestHtsContigDb.java +++ b/test/jalview/ext/htsjdk/TestHtsContigDb.java @@ -33,7 +33,7 @@ import org.testng.annotations.Test; */ public class TestHtsContigDb { - @Test + @Test(groups = "Functional") public final void testHTSReferenceSequence() throws Exception { HtsContigDb remmadb = new HtsContigDb("REEMADB", new File( diff --git a/test/jalview/gui/AlignFrameTest.java b/test/jalview/gui/AlignFrameTest.java index 316d9af..b2ef3f7 100644 --- a/test/jalview/gui/AlignFrameTest.java +++ b/test/jalview/gui/AlignFrameTest.java @@ -37,7 +37,7 @@ import org.testng.annotations.Test; public class AlignFrameTest { - @Test + @Test(groups = "Functional") public void testHideFeatureColumns() { SequenceI seq1 = new Sequence("Seq1", "ABCDEFGHIJ"); diff --git a/test/jalview/gui/AppVarnaTest.java b/test/jalview/gui/AppVarnaTest.java index 5bc0ddf..92770d5 100644 --- a/test/jalview/gui/AppVarnaTest.java +++ b/test/jalview/gui/AppVarnaTest.java @@ -28,7 +28,7 @@ import org.testng.annotations.Test; public class AppVarnaTest { - @Test + @Test(groups = "Functional") public void testReplaceOddGaps() { String struct = "{(<]}>)"; diff --git a/test/jalview/io/PfamFormatInputTest.java b/test/jalview/io/PfamFormatInputTest.java index 0eaf94b..fb99865 100644 --- a/test/jalview/io/PfamFormatInputTest.java +++ b/test/jalview/io/PfamFormatInputTest.java @@ -29,20 +29,20 @@ import org.testng.annotations.Test; public class PfamFormatInputTest { - @Test + @Test(groups = "Functional") public void testPfamFormatNoLimits() throws IOException { - AlignmentI al = new jalview.io.AppletFormatAdapter().readFile("ASEQ" + AlignmentI al = new AppletFormatAdapter().readFile("ASEQ" + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM"); Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences"); Assert.assertTrue(al.hasValidSequence(), "Didn't extract limits from PFAM ID"); } - @Test + @Test(groups = "Functional") public void testPfamFormatValidLimits() throws IOException { - AlignmentI al = new jalview.io.AppletFormatAdapter().readFile( + AlignmentI al = new AppletFormatAdapter().readFile( "ASEQ/15-25" + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM"); Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences"); -- 1.7.10.2