From 00e2a7a99a26d5e97f05b45096151ac4e00b3185 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 28 Nov 2006 09:43:51 +0000
Subject: [PATCH] Translation should not be adjusted outside annotation loop

---
 src/jalview/gui/SeqCanvas.java |    4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 1e66928..8a873a2 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -417,7 +417,7 @@ public class SeqCanvas extends JComponent
      */
     String getMask()
     {
-      String mask = "0";
+      String mask = "00";
       int maxWidth = 0;
       int tmp;
       for(int i=0; i<av.alignment.getHeight(); i++)
@@ -569,8 +569,6 @@ public class SeqCanvas extends JComponent
             g.translate(-LABEL_WEST, 0);
 
             ypos += cHeight+getAnnotationHeight()+hgap;
-            if(av.showAnnotation)
-              ypos -= 3;
 
             startRes += cWidth;
         }
-- 
1.7.10.2