From 011b6facdd2bc4e179d95833613a39d0778b5681 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 25 Jan 2019 11:15:40 +0000
Subject: [PATCH] JAL-3187 return a colour for linked features with
 transparency

---
 src/jalview/renderer/seqfeatures/FeatureRenderer.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index 38f281a..4e81e69 100644
--- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@ -417,6 +417,7 @@ public class FeatureRenderer extends FeatureRendererModel
           Color featureColour = fr2.getColor(sf, fc);
           renderFeature(g, seq, column - 1, column - 1, featureColour,
                   start, end, y1, colourOnly);
+          drawnColour = featureColour;
         }
       }
     }
-- 
1.7.10.2