From 0226eaac9440ec2084aeb31fca56ae4f9cf5c7cf Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 29 Jun 2012 21:54:28 +0000 Subject: [PATCH] Edited wiki page GSDI through web user interface. --- wiki/GSDI.wiki | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki index 517189d..ac4db98 100644 --- a/wiki/GSDI.wiki +++ b/wiki/GSDI.wiki @@ -30,7 +30,7 @@ Must be in phyloXML format unless option -q is used ([http://forester.googlecode === Output === Besides the main output of a gene tree with duplications and speciations assigned to all of its internal nodes, this program also produces the following: - * a log file, ending in `"_gsdi_log.txt"` + * a log file, ending in `"_gsdi_log.txt"` ([http://forester.googlecode.com/files/wnt_gsdi_log.txt example]) * a species tree file which only contains external nodes with were needed for the reconciliation, ending in `"_species_tree_used.xml"` * if the gene tree contains species with scientific species names such as "Pyrococcus horikoshii strain ATCC 700860" and if a mapping cannot be establish based on these, GSDI will attempt to map by removing the "strain" (or "subspecies") information, these will be listed in a file ending in `"_gsdi_remapped.txt"`. -- 1.7.10.2