From 034694aeb8734eb525992fa6706b99e84bd2cbc0 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Sat, 8 Jun 2013 01:38:41 +0000 Subject: [PATCH] in progress --- forester/data/tol_148.xml | 60 +- forester/data/tol_149.xml | 7260 +++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 7303 insertions(+), 17 deletions(-) create mode 100644 forester/data/tol_149.xml diff --git a/forester/data/tol_148.xml b/forester/data/tol_148.xml index bf65d81..e2327f3 100644 --- a/forester/data/tol_148.xml +++ b/forester/data/tol_148.xml @@ -2559,6 +2559,14 @@ http://www.vetmed.wisc.edu/students/vetmycology/15.jpg + + + 344612 + ASPCL + Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) + Aspergillus clavatus NRRL 1 + + Neosartorya & Emericella @@ -2589,20 +2597,39 @@ Onygenales order + + The Ajellomycetaceae, a new family of vertebrate-associated Onygenales + + + + mitosporic Onygenales & Onygenaceae - 5501 - COCIM - Coccidioides immitis - Valley fever fungus - species + + + 246410 + COCIM + Coccidioides immitis (strain RS) + Valley fever fungus + Coccidioides immitis RS + + + + + 336963 + UNCRE + Uncinocarpus reesii (strain UAMH 1704) + + - 336963 - UNCRE - Uncinocarpus reesii (strain UAMH 1704) + 447093 + AJECG + Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) + Darling's disease fungus + Histoplasma capsulatum @@ -2674,12 +2701,12 @@ Kluyveromyces - 28985 + 284590 KLULA - Kluyveromyces lactis + Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) Yeast Candida sphaerica - species + Kluyveromyces lactis NRRL Y-1140 @@ -2694,12 +2721,11 @@ - 33169 + 284811 ASHGO - Ashbya gossypii + Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) Yeast Eremothecium gossypii - species @@ -2733,12 +2759,12 @@ - 4959 + 284592 DEBHA - Debaryomyces hansenii + Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) Yeast Torulaspora hansenii - species + Debaryomyces hansenii CBS767 diff --git a/forester/data/tol_149.xml b/forester/data/tol_149.xml new file mode 100644 index 0000000..e2327f3 --- /dev/null +++ b/forester/data/tol_149.xml @@ -0,0 +1,7260 @@ + + + + + cellular organisms + + + Neomura + + + + 2759 + Eukaryota + superkingdom + + + Unikonta + + + 33154 + Opisthokonta + Fungi/Metazoa group + + + + Holozoa + + + Choanoflagellatea & Metazoa + + + 33208 + Metazoa + kingdom + + + Eumetazoa + + + + Bilateria & Cnidaria + + Bilateria + + Deuterostomia + + + + + 7711 + Chordata + phylum + + + Urochordata & Vertebrata + + + 7742 + Vertebrata + + + + 7776 + Gnathostomata + jawed vertebrates + superclass + + + + 117571 + Euteleostomi + bony vertebrates + + + + 8287 + Sarcopterygii + lobe-finned fish + + + Tetrapoda + + Amniota + + + 40674 + Mammalia + class + + + Theria + + + 9347 + Eutheria + Placental mammals + + + The new framework for understanding placental mammal evolution + + + + Boreoeutheria + Boreotheria 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Microcebus murinus + Lesser mouse lemur + species + http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg + + + + + 30611 + OTOGA + Otolemur garnettii + Garnett's greater bushbaby + Galago garnetti + Small-eared galago + Garnett's greater bushbaby + species + http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg + + + + + + + 37347 + TUPBE + Tupaia belangeri + Common tree shrew + Tupaia glis belangeri + species + http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG + + + + + + 314147 + Glires + Rodents and rabbits + + + + 9989 + Rodentia + order + + + Ctenohystrica & Mouse-related clade + + Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. + + + + Mouse-related clade + + + + 337687 + Muroidea + + + + 39107 + Murinae + subfamily + + + + 10090 + MOUSE + Mus musculus + Mouse + species + http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg + + + + + 10116 + RAT + Rattus norvegicus + Rat + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg + + + + + + 10036 + MESAU + Mesocricetus auratus + Golden hamster + species + http://www.dicts.info/img/ud/syrian_hamster.jpg + + + + + + 10020 + DIPOR + Dipodomys ordii + Ord's kangaroo rat + species + http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg + + + + + + 10141 + CAVPO + Cavia porcellus + Guinea pig + species + http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + + + + + + 43179 + SPETR + Spermophilus tridecemlineatus + Thirteen-lined ground squirrel + Ictidomys tridecemlineatus + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg + + + + + + 9975 + Lagomorpha + Rabbits, hares, pikas + order + + + + 9978 + OCHPR + Ochotona princeps + Southern American pika + species + http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg + + + + + 9986 + RABIT + Oryctolagus 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379584 + Caniformia + suborder + + + + 9646 + AILME + Ailuropoda melanoleuca + Giant panda + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg + + + + + 9615 + CANFA + Canis familiaris + Dog + Canis lupus familiaris + subspecies + http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG + + + + + + 9685 + FELCA + Felis catus + Cat + Felis silvestris catus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg + + + + + + + 9362 + Insectivora + hedgehogs, shrews, moles and others + order + + + + 9365 + ERIEU + Erinaceus europaeus + Western European hedgehog + species + http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg + + + + + 42254 + SORAR + Sorex araneus + Eurasian common shrew + European shrew + species + http://www.batraciens-reptiles.com/musaraigne2.jpg + + + + + + + + Atlantogenata + + + + 311790 + 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evolution of the turtle-specific body plan + + + + + + + + 8492 + Archosauria + + + Neognathae + + 8825 + Neognathae + superorder + + + Phasianidae & Anatidae (waterfowl) + + + 9005 + Phasianidae + family + + + + 9031 + CHICK + Gallus gallus + Chicken + Gallus domesticus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg + + + + + 9103 + MELGA + Meleagris gallopavo + Common turkey + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg + + + + + + 8839 + ANAPL + Anas platyrhynchos + Domestic duck + Anas boschas + species + http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg + + + + + + 59729 + TAEGU + Taeniopygia guttata + Zebra finch + Poephila guttata + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg + + + + + + 8496 + ALLMI + Alligator mississippiensis + American alligator + species + http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg + + + + + + 13735 + PELSI + Pelodiscus sinensis + (Wiegmann, 1835) Cox et al. 1998 + Chinese softshell turtle + Trionyx sinensis + species + http://www.chelonia.org/PsinensisTR1.jpg + + + + + + 28377 + ANOCA + Anolis carolinensis + Voigt, 1832 + Green anole + American chameleon + species + http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg + http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg + + + + + + + 8353 + Xenopus + genus + + + + 8355 + XENLA + Xenopus laevis + Daudin, 1802 + African clawed frog + Bufo laevis + species + http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg + + + + + 8364 + XENTR + Xenopus tropicalis + Western clawed frog + Silurana tropicalis + species + http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg + + + + + + + 7897 + LATCH + Latimeria chalumnae + West Indian ocean coelacanth + species + http://marinebio.org/upload/Latimeria-chalumnae/1.jpg + http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg + + + + + Teleostei + + 32443 + Teleostei + + + + 123368 + Acanthomorpha + + + + 32485 + Percomorpha + + + + 129949 + Smegmamorpha + + + + 32456 + Atherinomorpha + + + + 8090 + ORYLA + Oryzias latipes + Medaka fish + Japanese ricefish + species + http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg + + + + + 8083 + XIPMA + Xiphophorus maculatus + Guenther, 1866 + Southern platyfish + Platypoecilus maculatus + species + http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg + + + + + + 69293 + GASAC + Gasterosteus aculeatus + Three-spined stickleback + species + http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg + + + + + + 31031 + Tetraodontidae + puffers + family + + + + 31033 + TAKRU + Takifugu rubripes + Japanese pufferfish + Fugu rubripes + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg + + + + + 99883 + TETNG + Tetraodon nigroviridis + Green puffer + Chelonodon nigroviridis + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg + + + + + + 8128 + ORENI + Tilapia nilotica + Linnaeus, 1758 + Nile tilapia + Tilapia nilotica + species + http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg + + + + + + 8049 + GADMO + Gadus morhua + Atlantic cod + species + http://www.marinbi.com/g-morhua.jpg + + + + + + 7955 + DANRE + Danio rerio + Zebrafish + Brachydanio rerio + species + http://fishbase.org.cn/images/species/Darer_m0.jpg + + + + + + + 7868 + CALMI + Callorhynchus milii + Australian ghost shark + Australian ghost shark + species + http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg + + + + + + 7757 + PETMA + Petromyzon marinus + Sea lamprey + species + http://www.uk-fish.info/pics/sealampray01.jpg + + + + + Urochordata + + 7712 + Urochordata + subphylum + + + + 7718 + Ciona + genus + + + + 7719 + CIOIN + Ciona intestinalis + Transparent sea squirt + Ascidia intestinalis + species + http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg + + + + + 51511 + CIOSA + Ciona savignyi + Pacific transparent sea squirt + species + http://www.pnwscuba.com/invasives/photos/ciona4.jpg + + + + + + 34765 + OIKDI + Oikopleura dioica + Tunicate + species + http://jellieszone.com/images/oikopleura.jpg + + + + + + + 7739 + BRAFL + Branchiostoma floridae + Florida lancelet + Amphioxus + species + http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg + + + + + Hemichordata & Echinodermata + + + 10224 + SACKO + Saccoglossus kowalevskii + Agassiz, 1873 + Acorn worm + species + http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg + + + + + 7668 + STRPU + Strongylocentrotus purpuratus + Purple sea urchin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg + + + + + + Protostomia + + Ecdysozoa + + + 6656 + Arthropoda + phylum + + + + 197563 + Mandibulata + + + Pancrustacea + + + 33340 + Neoptera + subclass + + + + 33392 + Endopterygota + infraclass + + + Hymenoptera & Lepidoptera & Diptera + + Lepidoptera & Diptera + + + 7147 + Diptera + order + + + + 7215 + Drosophila + fruit flies + genus + + + The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research + + + + 32341 + Sophophora + subgenus + + + melanogaster & pseudoobscura subgroups + + + 32346 + melanogaster group + + + + 32351 + melanogaster subgroup + + + DROSE & DROSI & DROME & DROYA + + DROSE & DROSI & DROME + + DROSE & DROSI + + + 7238 + DROSE + Drosophila sechellia + Fruit fly + species + + + + + 7240 + DROSI + Drosophila simulans + Fruit fly + species + + + + + + 7227 + DROME + Drosophila melanogaster + Fruit fly + species + http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg + + + + + + 7245 + DROYA + Drosophila yakuba + Fruit fly + species + + + + + + 7220 + DROER + Drosophila erecta + Fruit fly + species + + + + + + 7217 + DROAN + Drosophila ananassae + Fruit fly + species + + + + + + 32358 + pseudoobscura subgroup + + + + 7234 + DROPE + Drosophila persimilis + Fruit fly + species + + + + + 46245 + DROPS + Drosophila pseudoobscura pseudoobscura + Fruit fly + subspecies + http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg + + + + + + + 7260 + DROWI + Drosophila willistoni + Fruit fly + species + + + + + Drosophila subgenus & Hawaiian Drosophila + + + Drosophila + subgenus + + + + 7230 + DROMO + Drosophila mojavensis + Fruit fly 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+ + + 7434 + Aculeata + suborder + + + + 7460 + APIME + Apis mellifera + Honeybee + species + http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + + + + + 12957 + ATTCE + Atta cephalotes + Linnaeus, 1758 + Leafcutter ant + species + http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + + + + + + 7425 + NASVI + Nasonia vitripennis + Parasitic wasp + species + http://www.freshpond.org/nasonia.jpg + + + + + + + 7070 + TRICA + Tribolium castaneum + Red flour beetle + species + http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg + + + + + + 33342 + Paraneoptera + infraclass + + + + 7524 + Hemiptera + order + + + + 7029 + ACYPI + Acyrthosiphon pisum + Pea aphid + species + http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + + + + + 13249 + RHOPR + Rhodnius prolixus + Triatomid bug + species + http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + + + + + + 121224 + PEDHC + Pediculus humanus subsp. corporis + Body louse + subspecies + http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg + + + + + + + 6658 + Branchiopoda + class + + + + 6661 + ARTSF + Artemia franciscana + Brine shrimp + Artemia sanfranciscana + species + http://www.alireza-asem.ir/images/Artemia.jpg + + + + + 6669 + DAPPU + Daphnia pulex + Water flea + species + http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + + + + + + + 61985 + Myriapoda + subphylum + + + + 7553 + Diplopoda + millipedes + class + + + + 118561 + Helminthomorpha + subclass + + + + 364406 + Antrokoreana gracilipes + species + http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg + + + + + 174156 + NARAN + Narceus annularis + Millipede + species + http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + + + + + + 52428 + Polyxenus lagurus + bristly millipede + species + http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg + + + + + + 7540 + Chilopoda + centipedes + class + + + + 29022 + SCUCO + Scutigera coleoptrata + House centipede + species + http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG + + + + + 126957 + Strigamia maritima + species + http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg + + + + + + + + 6945 + IXOSC + Ixodes scapularis + Black-legged tick + Deer tick + species + http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg + + + + + + 119089 + Chromadorea + class + + + + + nematode Clade V + + + 6237 + Caenorhabditis + genus + + + Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss + + + CAEBR & CAERE & CAEBE & CAEEL + + CAEBR & CAERE & CAEBE + + CAEBR & CAERE + + + 6238 + CAEBR + Caenorhabditis briggsae + species + http://www.life.umd.edu/biology/haag/briggsae_herm.jpg + + + + + 31234 + CAERE + Caenorhabditis remanei + Caenorhabditis vulgaris + species + http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg + + + + + + 135651 + CAEBE + Caenorhabditis brenneri + Nematode worm + Caenorhabditis CB5161 + species + + + + + + 6239 + CAEEL + Caenorhabditis elegans + species + http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif + + + + + + 281687 + CAEJA + Caenorhabditis japonica + species + + + + + + 54126 + PRIPA + Pristionchus pacificus + species + http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg + + + + + + 6279 + BRUMA + Brugia malayi + Filarial nematode worm + species + http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + + + + + + Lophotrochozoa + + Annelida & Mollusca + + + 6447 + Mollusca + phylum + + + + 6448 + Gastropoda + class + + + + 6500 + APLCA + Aplysia californica + California sea hare + species + http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg + + + + + 225164 + LOTGI + Lottia gigantea + Owl limpet + species + http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg + + + + + + 6545 + Pteriomorphia + Pteriomorpha + subclass + + + + 29159 + CRAGI + Crassostrea gigas + Thunberg, 1793 + Pacific oyster + Crassotrea gigas + Crassostrea angulata + Ostrea gigas + species + http://www.marlin.ac.uk/imgs/o_cragig.jpg + + + + + 50426 + PINFU + Pinctada fucata + Pearl oyster + species + http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg + + + + + + + 6340 + Annelida + phylum + + + + 283909 + CTEXX + Capitella teleta + Blake, Grassle & Eckelbarger, 2009 + Capitella sp. I + species + http://genome.jgi-psf.org/Capca1/capitella.jpg + + + + + 6412 + HELRO + Helobdella robusta + Californian leech + species + http://genome.jgi-psf.org/Helro1/Helro_leech.jpg + + + + + + + 6157 + Platyhelminthes + phylum + + + + 6183 + SCHMA + Schistosoma mansoni + Blood fluke + species + http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + + + + + 79327 + SCHMD + Schmidtea mediterranea + Freshwater planarian flatworm + species + http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg + + + + + + + + Cnidaria + + 6073 + Cnidaria + phylum + + + + 6102 + Hexacorallia + Ceriantipatharia + Zoantharia + subclass + + + + 70779 + ACRDI + Acropora digitifera + Staghorn coral + species + http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg + + + + + 45351 + NEMVE + Nematostella vectensis + Starlet sea anemone + species + http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg + + + + + + 6085 + HMAXX + Hydra magnipapillata + Ito, 1947 + species + http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif + + + + + + + 10228 + TRIAD + Trichoplax adhaerens + Trichoplax reptans + species + http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg + + + + + + + + 27923 + MNELE + Mnemiopsis leidyi + A. gassiz, 1865 + Sea walnut + species + http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg + http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg + + + + + 400682 + AMPQE + Amphimedon queenslandica + Hooper & Van Soest, 2006 + Sponge + Reniera sp. JGI-2005 + species + http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg + + + + + + 81524 + Codonosigidae + family + + + + 81824 + MONBE + Monosiga brevicollis + Choanoflagellate + species + http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg + + + + + 946362 + SALS5 + Salpingoeca rosetta + Proterospongia sp. ATCC 50818 + Salpingoeca sp. ATCC 50818 + species + http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg + + + + + + Ichthyophonida & Filasterea + + + 198625 + Ichthyophonida + order + + + + 4881 + AMOPA + Amoebidium parasiticum + species + http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg + + + + + 72019 + SARXX + Sphaeroforma arctica + species + http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg + + + + + + Filasterea + + + + + + + + 595528 + CAPO3 + Capsaspora owczarzaki (strain ATCC 30864) + http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg + + + + + 134558 + Ministeria vibrans + species + http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg + + + + + + + + Holomycota + Nucletmycea + + + + 4751 + Fungi + kingdom + + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina + + Dikarya & Mucoromycotina + + + 451864 + Dikarya + subkingdom + + + + + + + + 4890 + Ascomycota + phylum + + + Pezizomycotina & Saccharomycetales + + + 147538 + Pezizomycotina + Euascomycota + subphylum + + + A five-gene phylogeny of Pezizomycotina + + + + + + 716546 + Leotiomyceta + + + Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes + + Sordariomyceta & Dothideomycetes & Lecanoromycetes + + Sordariomyceta & Lecanoromycetes + + + 715989 + Sordariomyceta + + + + 147550 + Sordariomycetes + class + + + Magnaporthales & Hypocreales + + + 5125 + Hypocreales + order + + + + 398408 + AALXX + Acremonium alcalophilum + species + http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg + + + + + 5518 + GIBZE + Gibberella zeae + Wheat head blight fungus + Fusarium graminearum + species + http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg + + + + + 29875 + HYPVI + Hypocrea virens + Gliocladium virens + Trichoderma virens + Gliocladium flavofuscum + species + http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg + + + + + + 148305 + MAGGR + Magnaporthe grisea + Rice blast fungus + Pyricularia grisea + species + http://www.forestryimages.org/images/768x512/5369002.jpg + + + + + + 5139 + Sordariales + order + + + + 35718 + Chaetomiaceae + family + + + + 35719 + Thielavia + genus + + + + 573729 + THIHA + Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) + (Apinis) Oorschot 1977 + Sporotrichum thermophilum + Myceliophthora thermophila + species + http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg + + + + + 578455 + THITE + Thielavia terrestris (strain ATCC 38088 / NRRL 8126) + Acremonium alabamense + Thielavia terrestris NRRL 8126 + http://genome.jgi-psf.org/public/Thite2/Thite1.jpg + + + + + + 1029505 + CHAGB + Chaetomium globosum + Kunze 1817 + Soil fungus + species + + + + + + 5141 + NEUCR + Neurospora crassa + species + + + + + + + 147548 + Leotiomycetes + class + + + + 28983 + Sclerotiniaceae + family + + + + 40559 + BOTFU + Botryotinia fuckeliana + Noble rot fungus + Botrytis cinerea + species + + + + + 5180 + SCLSC + Sclerotinia sclerotiorum + White mold + Whetzelinia sclerotiorum + species + + + + + + 78148 + Oidiodendron maius + species + + + + + + + 388435 + Lecanoromycetidae + subclass + + + + 27339 + Cladonia grayi + Cladonia grayi Merr + species + http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg + + + + + 107463 + Xanthoria parietina + species + http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg + + + + + + + 147541 + Dothideomycetes + bitunicate ascomycetes + class + + + A class-wide phylogenetic assessment of Dothideomycetes + + + + 451867 + Dothideomycetidae + subclass + + + A multigene phylogeny of the Dothideomycetes using four nuclear loci + + + + + + + + 134362 + Capnodiales + order + + + + 41254 + Mycosphaerella + genus + + + + 83344 + Mycosphaerella fijiensis + species + + + + + 54734 + MYCGR + Mycosphaerella graminicola + Speckled leaf blotch fungus + Septoria tritici + species + + + + + 64363 + MYCPJ + Mycosphaerella pini + Red band needle blight disease fungus + Dothistroma septosporum + Dothistroma pini + species + + + + + 692275 + MPSXX + Mycosphaerella populorum SO2202 + Septoria musiva SO2202 + http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg + + + + + + 430998 + BCOXX + Baudoinia compniacensis + species + http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg + + + + + + 5580 + AURPU + Aureobasidium pullulans + Black yeast + Pullularia pullulans + species + + + + 178873 + APPXX + Aureobasidium pullulans var. pullulans + varietas + + + + + 46634 + APMXX + Aureobasidium pullulans var. melanogenum + varietas + http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG + + + + + 1042127 + APSXX + Aureobasidium pullulans var. subglaciale + Aureobasidium pullulans var. nov. PZ-2008 + varietas + + + + + + + 715340 + Pleosporineae + suborder + + + + 28556 + Pleosporaceae + family + + + Cochliobolus & Setosphaeria + + + 5015 + Cochliobolus + genus + + + + 5016 + COCHE + Cochliobolus heterostrophus + Drechslera maydis + species + + + + + 45130 + COCSA + Cochliobolus sativus + Bipolaris sorokiniana + species + http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg + + + + + + 93612 + SETTU + Setosphaeria turcica + (Luttr.) K.J. Leonard & Suggs, (1974) + Northern corn leaf blight disease fungus + Exserohilum turcicum + Helminthosporium turcicum + species + + + + + + 426418 + PYRTR + Pyrenophora tritici-repentis (strain Pt-1C-BFP) + Wheat tan spot fungus + Drechslera tritici-repentis + + + + + + 13684 + PHANO + Phaeosphaeria nodorum + Glume blotch fungus + Septoria nodorum + species + + + + + + + + 28568 + Trichocomaceae + family + + + + 5052 + Aspergillus + genus + + + + 5059 + ASPFL + Aspergillus flavus + Link 1809 + Petromyces flavus + species + http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg + + + + + 5061 + ASPNG + Aspergillus niger + Tiegh + species + http://www.vetmed.wisc.edu/students/vetmycology/15.jpg + + + + + 344612 + ASPCL + Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) + Aspergillus clavatus NRRL 1 + + + + + Neosartorya & Emericella + + + 195546 + EMENI + Emericella nidulans + Vuill. 1927 + Aspergillus nidulans + species + + + + + 331117 + NEOFI + Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) + Aspergillus fischerianus + + + + + + + + 33183 + Onygenales + order + + + The Ajellomycetaceae, a new family of vertebrate-associated Onygenales + + + + + mitosporic Onygenales & Onygenaceae + + + + + 246410 + COCIM + Coccidioides immitis (strain RS) + Valley fever fungus + Coccidioides immitis RS + + + + + 336963 + UNCRE + Uncinocarpus reesii (strain UAMH 1704) + + + + + + 447093 + AJECG + Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) + Darling's disease fungus + Histoplasma capsulatum + + + + + + + 656061 + TUBMM + Tuber melanosporum (strain Mel28) + Perigord black truffle + Tuber melanosporum Mel28 + http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg + + + + + + 4892 + Saccharomycetales + budding yeasts + order + + + Candida & Debaryomyces & Saccharomycetacea + + + 4893 + Saccharomycetaceae + family + + + Saccharomyces_Pichia + + Saccharomyces + + + 27288 + SACCA + Saccharomyces castellii + Yeast + Saccharomyces castellii + species + + + + + 4932 + YEAST + Saccharomyces cerevisiae + Baker's yeast + species + + + + + + 4905 + PICAN + Pichia angusta + Yeast + Hansenula polymorpha + species + + + + + Kluyveromyces & Ashbya + + Kluyveromyces + + + 284590 + KLULA + Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) + Yeast + Candida sphaerica + Kluyveromyces lactis NRRL Y-1140 + + + + + 4914 + KLUWA + Kluyveromyces waltii + Yeast + species + + + + + + 284811 + ASHGO + Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) + Yeast + Eremothecium gossypii + + + + + + Candida & Debaryomyces + + + 5475 + Candida + genus + + + + 5476 + CANAL + Candida albicans + Yeast + species + + + + + 5482 + CANTR + Candida tropicalis + Yeast + species + + + + + + 284592 + DEBHA + Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) + Yeast + Torulaspora hansenii + Debaryomyces hansenii CBS767 + + + + + + + 4952 + YARLI + Yarrowia lipolytica + Candida lipolytica + species + + + + + + + 451866 + Taphrinomycotina + subphylum + + + Pneumocystidomycetes & Schizosaccharomycetes + + + 4895 + Schizosaccharomyces + genus + + + + 4897 + SCHJP + Schizosaccharomyces japonicus + Fission yeast + species + + + + + 4899 + SCHOT + Schizosaccharomyces octosporus + Fission yeast + species + http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG + + + + + 4896 + SCHPO + Schizosaccharomyces pombe + Fission yeast + species + + + + + + 4754 + PNECA + Pneumocystis carinii + species + + + + + + 5606 + Saitoella complicata + species + + + + + + + 5204 + Basidiomycota + phylum + + + Agaricomycotina & Ustilaginomycotina & Pucciniomycotina + + Agaricomycotina & Ustilaginomycotina + + + 5302 + Agaricomycotina + + + + 155619 + Homobasidiomycetes + class + + + Evolution of complex fruiting–body morphologies in homobasidiomycetes + + + Agaricomycetidae & Gloeophyllum & Aphyllophorales + + Agaricomycetidae & Gloeophyllum + + + 452333 + Agaricomycetidae + subclass + + + Agaricales & Boletales + + + 5338 + Agaricales + order + + + Agaricus & Coprinopsis & Laccaria & Pleurotus + + Agaricus & Coprinopsis & Laccaria + + Agaricus & Coprinopsis + + + 597362 + AGABU + Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) + White button mushroom + Agaricus bisporus var. burnettii JB137-S8 + http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg + + + + + 5346 + COPCI + Coprinopsis cinerea + Inky cap fungus + Hormographiella aspergillata + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg + + + + + + 29883 + LACBI + Laccaria bicolor + Bicoloured deceiver + Laccaria laccata var. bicolor + species + http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG + + + + + + 206324 + Gymnopus luxurians + species + http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg + + + + + + 5322 + PLEOS + Pleurotus ostreatus + Oyster mushroom + White-rot fungus + species + http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg + + + + + + 68889 + Boletales + Melanogastrales + Sclerodermatales + order + + + + 227334 + Coniophorineae + suborder + + + + 80637 + CPUXX + Coniophora puteana + Schum. ex Fries + cellar fungus + species + http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg + + + + + 578457 + SERL9 + Serpula lacrymans var. lacrymans (strain S7.9) + Dry rot fungus + http://www.anbg.gov.au/fungi/images/0160.jpg + + + + + + 388859 + Hydnomerulius pinastri + Spiny dry rot fungus + species + http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg + + + + + + + 202697 + Jaapia argillacea + species + http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg + + + + + + 104355 + GLOTR + Gloeophyllum trabeum + Brown rot fungus + species + http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg + + + + + + 5303 + Aphyllophorales + Gäum. (1926) + Shelf Fungi + Polyporales + order + + + + 83233 + Coriolaceae + family + + + The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) + + + + + + + Postia & Fomitopsis & Wolfiporia & Trametes + + Antrodia clade + + Antrodia clade + + + + 40483 + FPIXX + Fomitopsis pinicola + (Swartz) P. Karsten + Red banded polypore + Fomes pinicola + Boletus pinicola + species + http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg + + + + + 104341 + PPLXX + Postia placenta + Rhodonia placenta + species + http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg + + + + + core polyporoid clade + + core polyporoid clade + + + + 5325 + TRAVE + Trametes versicolor + (L.) Lloyd 1921 + White-rot fungus + Coriolus versicolor + Bjerkandera versicolor + species + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg + + + + + 742152 + WOLCO + Wolfiporia cocos (strain MD-104) + Brown rot fungus + Wolfiporia cocos MD-104 SS10 + http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg + + + + + + + 42742 + CERSU + Ceriporiopsis subvermispora + species + + + + + + 732165 + DICSQ + Dichomitus squalens (strain LYAD-421) + Western red white-rot fungus + Dichomitus squalens LYAD-421 SS1 + http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg + + + + + + + 13563 + HETAN + Heterobasidion annosum + Root rot fungus + species + + + + + + 5215 + Tremellaceae + family + + + + 5207 + CRYNE + Cryptococcus neoformans + Filobasidiella neoformans + species + + + + + 1029985 + TREME + Tremella mesenterica + Pers. 1800 + Jelly fungus + Yellow Brain + Tremella lutescens + species + + + + + + + 452284 + Ustilaginomycotina + subphylum + + + + 425265 + MALGO + Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) + Dandruff-associated fungus + + + + + 5270 + USTMA + Ustilago maydis + Smut fungus + species + + + + + + + 29000 + Pucciniomycotina + subphylum + + + + 5258 + Pucciniales + rusts + order + + + + 156696 + MELLP + Melampsora laricis-populina + Kleb. 1902 + Melampsora larici-populina + Melampsora laricipopulina + species + + + + + 1029947 + PUCGR + Puccinia graminis + Pers. 1794 + Black stem rust fungus + Wheat rust + species + + + + + + 89013 + mitosporic Sporidiobolales + + + + 29898 + RHOGR + Rhodotorula graminis + Yeast + species + + + + + 40563 + SPORO + Sporobolomyces roseus + Kluyver & C. B. Niel 1924 + species + + + + + + + + 148960 + WALSE + Wallemia sebi + species + + + + + + + 451507 + Mucoromycotina + subphylum + + + + 34489 + Mucoraceae + family + + + + 36080 + MUCCI + Mucor circinelloides + Mucor griseo-roseus + species + + + + + 4837 + PHYBL + Phycomyces blakesleeanus + species + + + + + 64495 + RHIOR + Rhizopus oryzae + Rhizopus delemar + species + + + + + + 1069443 + MVNXX + Mortierella verticillata NRRL 6337 + species + http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg + http://www.diark.org/img/species_pict/Mortierella_verticillata + + + + + + + 61392 + Coemansia reversa + species + + + + + + 28583 + ALLMA + Allomyces macrogynus + species + + + + + + 4761 + Chytridiomycota + chytrids + Mastigomycotina + phylum + + + + 451435 + Chytridiomycetes + class + + + + 109871 + BATDE + Batrachochytrium dendrobatidis + Frog chytrid fungus + species + + + + + 109760 + SPIPN + Spizellomyces punctatus + species + + + + + + 1123529 + GONPR + Gonapodya prolifera + A. Fisch. 1892 + Aquatic fungus + species + http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg + + + + + + + 73868 + PIRSE + Piromyces sp. (strain E2) + species + http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg + + + + + + 6033 + Encephalitozoon + genus + + + + 6035 + ENCCU + Encephalitozoon cuniculi (strain GB-M1) + Microsporidian parasite + species + http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg + + + + + 907965 + ENCHA + Encephalitozoon hellem (strain ATCC 50504) + Microsporidian parasite + http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg + + + + + + Fonticula & Nucleariidae + + + + + 691883 + Fonticula alba + Fonticula alba Worley, Raper & Hohl. 1979 + species + + + + + 154970 + Nuclearia simplex + species + + + + + + + Amoebozoa + + 554915 + Amoebozoa + + + + 33083 + Dictyosteliida + dictyostelid cellular slime molds + order + + + Dictyostelium + + 5782 + Dictyostelium + genus + + + + 44689 + DICDI + Dictyostelium discoideum + Slime mold + species + http://www.tins.ne.jp/~tsukubagec/csm.GIF + + + + + 5786 + DICPU + Dictyostelium purpureum + Slime mold + species + + + + + + 13642 + POLPA + Polysphondylium pallidum + Cellular slime mold + species + http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg + + + + + + 5759 + ENTHI + Entamoeba histolytica + species + + + + + + Bikonta + + + + Plants+HC+SAR megagroup + + Plants+HC + + Archaeplastida + + + 33090 + Viridiplantae + green plants + kingdom + + + + 3193 + Embryophyta + + + + 58023 + Tracheophyta + vascular plants + + + + 58024 + Spermatophyta + seed plants + + + + 3398 + Magnoliophyta + flowering plants + Angiospermae + + + + 71240 + eudicotyledons + + + + 91827 + core eudicotyledons + + + + 71275 + rosids + subclass + + + fabids & malvids + + + 91835 + fabids + + + Rosales & Cucurbitales & Fabales + + Rosales & Cucurbitales + + + 3745 + Rosaceae + family + + + + 57918 + FRAVE + Fragaria vesca + Woodland strawberry + Fragaria vesca L. + European strawberry + alpine strawberry + species + http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg + http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg + + + + + 3760 + PRUPE + Prunus persica + Peach + Persica vulgaris + Amygdalus persica + species + http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg + + + + + + 3659 + CUCSA + Cucumis sativus + Cucumber + species + + + + + + 3814 + Papilionoideae + subfamily + + + + 3847 + SOYBN + Glycine max + cv. Wye + Soybean + Glycine hispida + species + + + + + 3880 + MEDTR + Medicago truncatula + Barrel medic + Medicago tribuloides + species + http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg + + + + + + + 3646 + Malpighiales + order + + + + 3977 + Euphorbiaceae + family + + + + 3983 + MANES + Manihot esculenta + Tapioca + Jatropha manihot + species + http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg + + + + + 3988 + RICCO + Ricinus communis + Castor bean + Ricinus sanguineus + species + http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg + + + + + + 3694 + POPTR + Populus trichocarpa + Western balsam poplar + Populus balsamifera subsp. trichocarpa + species + + + + + + + 91836 + malvids + + + Brassicales & Sapindales + + + 3699 + Brassicales + order + + + + 3700 + Brassicaceae + family + + + + 3701 + Arabidopsis + genus + + + + 59689 + ARALY + Arabidopsis lyrata + Lyre-leaved rock-cress + species + + + + + 3702 + ARATH + Arabidopsis thaliana + Mouse-ear cress + species + + + + + + 98038 + THEHA + Thellungiella halophila + Salt cress + species + http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg + + + + + + 3649 + CARPA + Carica papaya + Papaya + species + http://www.biopix.com/photos/jko-carica-papaya-00412.jpg + http://www.texasriviera.com/greenthumbs/papaya10.jpg + + + + + + 2706 + Citrus + genus + + + + 85681 + CCLXX + Citrus clementina + Citrus clementina hort. ex Tanaka + species + http://palmen-bolschetz.de/images/citrus%20clementine.jpg + + + + + 2711 + CITSI + Citrus sinensis + Sweet orange + Citrus x sinensis + Citrus aurantium var. sinensis + species + http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg + + + + + + + 71139 + EUCGR + Eucalyptus grandis + Flooded gum + species + http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg + + + + + + + 582304 + VITVI + Vitis vinifera + Grape + species + + + + + + 91888 + lamiids + + + + 4070 + Solanaceae + family + + + + 4107 + Solanum + genus + + + + 49274 + Lycopersicon + subgenus + + + + 4081 + SOLLC + Solanum lycopersicum + Tomato + Lycopersicon esculentum + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg + + + + + 4084 + SOLPI + Solanum pimpinellifolium + Currant tomato + Lycopersicon pimpinellifolium + species + http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg + + + + + + 4113 + SOLTU + Solanum tuberosum + Potato + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg + + + + + + 4097 + TOBAC + Nicotiana tabacum + Common tobacco + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg + + + + + + 4155 + MIMGU + Mimulus guttatus + Yellow monkey flower + Yellow monkey flower + species + + + + + + + 218851 + AQUCA + Aquilegia caerulea + E.James + Rocky mountain columbine + Aquilegia coerulea + species + http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG + + + + + + 4447 + Liliopsida + monocots + Monocotyledoneae + class + + + + 4479 + Poaceae + grass family + Gramineae + family + + + + 147369 + Panicoideae + Link, 1827 + Centothecoideae + subfamily + + + + 147429 + Andropogoneae + Dumort., 1824 + tribe + + + + 4558 + SORBI + Sorghum bicolor + Sorghum + Sorghum vulgare + species + + + + + 4577 + MAIZE + Zea mays + Maize + species + + + + + + 147428 + Paniceae + tribe + + + + 38727 + PANVG + Panicum virgatum + switchgrass + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg + + + + + 4555 + SETIT + Setaria italica + Foxtail millet + Panicum italicum + species + http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg + + + + + + + 359160 + BEP clade + + + + 4527 + Oryza + genus + + + + 4530 + ORYSA + Oryza sativa + Rice + species + + + + + 39947 + ORYSJ + Oryza sativa subsp. japonica + Rice + + + + + + 15368 + BRADI + Brachypodium distachyon + Purple false brome + Trachynia distachya + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg + + + + + + + 4641 + MUSAC + Musa acuminata + Banana + Musa cavendishii + species + http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg + + + + + + + 3329 + PICAB + Picea abies + H.Karst + Norway spruce + Picea excelsa + species + http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg + + + + + + 88036 + SELML + Selaginella moellendorffii + Hieron + Spikemoss + species + http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG + + + + + + 145481 + PHYPA + Physcomitrella patens subsp. patens + Moss + subspecies + http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg + + + + + + 3041 + Chlorophyta + phylum + + + + 13792 + Mamiellales + order + + + + 70447 + Ostreococcus + genus + + + + 436017 + OSTLU + Ostreococcus lucimarinus (strain CCE9901) + + + + + 385169 + ORCXX + Ostreococcus sp. RCC809 + species + + + + + 70448 + OSTTA + Ostreococcus tauri + species + http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg + + + + + + 38832 + Micromonas + genus + + + + 564608 + MICPC + Micromonas pusilla (strain CCMP1545) + Picoplanktonic green alga + http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg + + + + + 296587 + MICSR + Micromonas sp. (strain RCC299 / NOUM17) + Picoplanktonic green alga + Micromonas sp. RCC299 + species + + + + + + Trebouxiophyceae & Chlorophyceae + + + 75966 + Trebouxiophyceae + class + + + + 763042 + ASCXX + Asterochloris sp. Cgr/DA1pho + species + http://genome.jgi-psf.org/Astpho1/Figure_3.jpg + + + + + 554065 + CHLVA + Chlorella variabilis + Shihira & Krauss 1965 + Chlorella sp. NC64A + Chlorella sp. Bnd1-ZK + species + http://www.sinice.cz/res/image/collection/Chlorella.jpg + + + + + 574566 + CSUXX + Coccomyxa subellipsoidea C-169 + Chlorella vulgaris C-169 + Coccomyxa sp. C-169 + species + http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg + + + + + + 3042 + Chlamydomonadales + order + + + + 3055 + CHLRE + Chlamydomonas reinhardtii + Chlamydomonas smithii + species + + + + + 3067 + VOLCA + Volvox carteri + Green alga + species + http://genome.jgi-psf.org/Volca1/Volvox.jpg + + + + + + + + + 2763 + Rhodophyta + red algae + + + + 265316 + Cyanidiaceae + family + + + + 45157 + CYAME + Cyanidioschyzon merolae + Red alga + species + http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg + + + + + 130081 + GALSU + Galdieria sulphuraria + Red alga + species + http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg + + + + + + 2769 + CHOCR + Chondrus crispus + Carragheen moss + species + http://www.seaweed.ie/_images/MG3_0485.png + + + + + + 38254 + Glaucocystophyceae + Glaucophyta + class + + + + 2762 + CYAPA + Cyanophora paradoxa + species + http://www.people.vcu.edu/~rfisher/paradoxa.jpg + + + + + 38271 + Glaucocystis nostochinearum + species + http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg + + + + + + Hacrobia (Cryptophyta & Haptophyceae & Centroheliozoa) + + + 2903 + EMIHU + Emiliania huxleyi + species + http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg + + + + + 55529 + GUITH + Guillardia theta + Cryptomonas phi + species + http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg + + + Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages + + + + + + + + Stramenopiles & Alveolata & Rhizaria + + Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists + + + + + Stramenopiles & Alveolata + + + 33630 + Alveolata + superphylum + + + Apicomplexa & Dinophyceae + + + 5794 + Apicomplexa + phylum + + + The origins of apicomplexan sequence innovation (2009) + + + + + Aconoidasida & Coccidia + + + 422676 + Aconoidasida + Mehlhorn et al. 1980 + Hematozoa + class + + + + 5820 + Plasmodium + genus + + + + 5825 + PLACH + Plasmodium chabaudi + species + + + + + 5833 + PLAFA + Plasmodium falciparum + species + + + + + 73239 + PLAYO + Plasmodium yoelii yoelii + subspecies + + + + + + Piroplasmida + order + + + Theileria + + 5873 + Theileria + genus + + + + 5874 + THEAN + Theileria annulata + species + + + + + 5875 + THEPA + Theileria parva + species + + + + + + 5865 + BABBO + Babesia bovis + species + http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg + + + + + + + 5796 + Coccidia + coccidians + subclass + + + The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees + + + + + + 5802 + EIMTE + Eimeria tenella + Coccidian parasite + species + http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg + + + + + 5811 + TOXGO + Toxoplasma gondii + species + + + + + + + 5806 + Cryptosporidium + genus + + + + 237895 + CRYHO + Cryptosporidium hominis + species + + + + + 5807 + CRYPV + Cryptosporidium parvum + species + + + + + + + 2864 + Dinophyceae + Fritsch, 1927 + dinoflagellates + Chromophyta + Dinoflagellata + Pyrrophyta + class + + + + 2866 + CRYCO + Crypthecodinium cohnii + Dinoflagellate + species + http://www.lamolina.net/image/DHAcell.jpg + + + + + 2923 + THOHE + Thoracosphaera heimii + Dinoflagellate + species + http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg + + + + + + + 5878 + Ciliophora + ciliates + phylum + + + + 431838 + Intramacronucleata + subphylum + + + + 6020 + Oligohymenophorea + class + + + + 5888 + PARTE + Paramecium tetraurelia + species + http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg + + + + + 5911 + TETTH + Tetrahymena thermophila + species + http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png + + + + + + 1172189 + OTRXX + Oxytricha trifallax + Stein, 1859 + species + http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif + + + + + + 5961 + BLEJA + Blepharisma japonicum + species + http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg + http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg + + + + + + + 33634 + Stramenopiles + Patterson 1989, emend. Adl et al. 2005 + Chromophyta + heterokonts + + + Pelagophyceae & Bacillariophyta & Oomycetes + + Seven Gene Phylogeny of Heterokonts + + + + + Pelagophyceae & Bacillariophyta + + + 2836 + Bacillariophyta + diatoms + phylum + + + + 33850 + Bacillariophycidae + + + + 186039 + FRACY + Fragilariopsis cylindrus + Krieger + Nitzschia cylindrus + species + http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg + + + + + 2850 + PHATR + Phaeodactylum tricornutum + Bohlin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png + + + + + + 35128 + THAPS + Thalassiosira pseudonana + Hasle & Heimdal + Marine diatom + Cyclotella nana + species + http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg + + + + + + 44056 + AURAN + Aureococcus anophagefferens + Hargraves & Sieburth + Harmful bloom alga + species + http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg + + + + + + 4783 + Phytophthora + genus + + + + 4787 + PHYIN + Phytophthora infestans + (Mont.) de Bary 1876 + Potato late blight fungus + species + http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg + + + + + 164328 + PHYRM + Phytophthora ramorum + Sudden oak death agent + species + http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg + + + + + 67593 + PHYSO + Phytophthora sojae + Soybean stem and root rot agent + Phytophthora megasperma f. sp. glycines + species + http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg + + + + + 4785 + PHYCI + Phytophthora cinnamomi + Cinnamon fungus + http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg + + + + + + + 33674 + Thraustochytriaceae + Thraustochytriales + family + + + + 702273 + AKEXX + Aplanochytrium kerguelense PBS07 + http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg + + + + + 876976 + SAGXX + Schizochytrium aggregatum ATCC 28209 + http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG + + + + + 87102 + ALIXX + Aurantiochytrium limacinum + Schizochytrium limacinum + species + http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg + + + + + + + + 543769 + Rhizaria + + + + 71427 + Allogromia laticollaris + species + http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg + + + + + 227086 + BIGNA + Bigelowiella natans + Chlorarachnion sp. (strain CCMP621) + Pedinomonas minutissima + species + http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg + + + + + + + Excavata + + + + Kinetoplastida & Heterolobosea + + + 5654 + Trypanosomatidae + family + + + + 5690 + Trypanosoma + genus + + + + 5702 + TRYBB + Trypanosoma brucei brucei + subspecies + + + + + 5693 + TRYCR + Trypanosoma cruzi + species + http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg + + + + + + 5664 + LEIMA + Leishmania major + species + + + + + + 5762 + NAEGR + Naegleria gruberi + Amoeba + species + http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg + + + + + Metamonada + + + 5741 + GIALA + Giardia lamblia + Giardia intestinalis + Giardia lamblia + species + + + + + 5722 + TRIVA + Trichomonas vaginalis + species + + + + + + + 554296 + Apusozoa + + + Planomonadida ord. nov. 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