From 065e78a9a486362e2dd3ab8b64b8fd5111d4c656 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 22 Aug 2017 22:10:27 +0100
Subject: [PATCH] JAL-2681 canonicalise DB source before fetching to avoid
 fetching the same ref !

---
 src/jalview/ws/seqfetcher/ASequenceFetcher.java |    7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index a07e88b..9284f82 100644
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -130,11 +130,12 @@ public class ASequenceFetcher
     Hashtable<String, List<String>> queries = new Hashtable<>();
     for (DBRefEntry ref : refs)
     {
-      if (!queries.containsKey(ref.getSource()))
+      String canonical = DBRefUtils.getCanonicalName(ref.getSource());
+      if (!queries.containsKey(canonical))
       {
-        queries.put(ref.getSource(), new ArrayList<String>());
+        queries.put(canonical, new ArrayList<String>());
       }
-      List<String> qset = queries.get(ref.getSource());
+      List<String> qset = queries.get(canonical);
       if (!qset.contains(ref.getAccessionId()))
       {
         qset.add(ref.getAccessionId());
-- 
1.7.10.2