From 07e0b582a6cd570e7bbfa74cb12dc11905d701b3 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 1 Feb 2005 19:04:14 +0000
Subject: [PATCH] Apply to all groups method added

---
 src/jalview/gui/SliderPanel.java |   55 ++++++++++++++++++++++++++------------
 1 file changed, 38 insertions(+), 17 deletions(-)

diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java
index dee77d5..79a05de 100755
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,10 +1,11 @@
 package jalview.gui;
 
 import jalview.jbgui.*;
-import jalview.datamodel.*;
 import jalview.schemes.*;
+import jalview.datamodel.*;
 import java.awt.event.*;
 import javax.swing.event.*;
+import java.util.*;
 
 public class SliderPanel extends GSliderPanel
 {
@@ -49,32 +50,50 @@ public class SliderPanel extends GSliderPanel
 
   public void valueChanged(int i)
   {
+    ColourSchemeI toChange = null;
+    Vector allGroups = null;
+    int groupIndex = 0;
 
-    if(forConservation)
+    if(allGroupsCheck.isSelected())
     {
-      if (cs instanceof ConservationColourScheme)
-        ( (ConservationColourScheme) cs).inc = i;
+      allGroups = ap.av.alignment.getGroups();
+      groupIndex = allGroups.size()-1;
     }
     else
-     {
-       if( cs instanceof ResidueColourScheme)
-       {
-         ResidueColourScheme rcs = (ResidueColourScheme) cs;
-         rcs.setThreshold(i);
-       }
-       else if( cs instanceof ScoreColourScheme)
-       {
-         ScoreColourScheme scs = (ScoreColourScheme) cs;
-         scs.setThreshold(i);
-       }
-
-     }
+      toChange = cs;
+
+
+    while( groupIndex > -1 )
+    {
+      if(allGroups!=null)
+        toChange = ((SequenceGroup)allGroups.get(groupIndex)).cs;
+
+      if (forConservation)
+      {
+        if (toChange instanceof ConservationColourScheme)
+          ( (ConservationColourScheme) toChange).inc = i;
+      }
+      else
+      {
+        if (toChange.canThreshold())
+          ( (ResidueColourScheme) toChange).setThreshold(i);
+      }
+
+      groupIndex--;
+    }
+
 
     ap.seqPanel.seqCanvas.paintFlag=true;
     ap.seqPanel.repaint();
 
   }
 
+  public void setAllGroupsCheckEnabled(boolean b)
+  {
+    allGroupsCheck.setEnabled(b);
+  }
+
+
   public void valueField_actionPerformed(ActionEvent e)
   {
     try{
@@ -91,4 +110,6 @@ public class SliderPanel extends GSliderPanel
   {
     return Integer.parseInt(valueField.getText());
   }
+
+
 }
-- 
1.7.10.2