From 08fd44eb6a6c98de9b1e272e3b798b38ae2b8cec Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 17 Oct 2013 11:14:46 +0100
Subject: [PATCH] JAL-1397 make sure annotation colourscheme is up to date
 after loading the project

---
 src/jalview/gui/Jalview2XML.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 0a0b169..45e8102 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -3487,6 +3487,7 @@ public class Jalview2XML
             view.getHeight());
     af.alignPanel.updateAnnotation(false, true); // recompute any autoannotation
     reorderAutoannotation(af, al, autoAlan);
+    af.alignPanel.alignmentChanged();
     return af;
   }
 
-- 
1.7.10.2