From 0983cd787ef575844351cfca77686b918fbb81fd Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 17 May 2011 09:25:44 +0100
Subject: [PATCH] ensure all colour statements added to string set

---
 src/jalview/ext/jmol/JmolCommands.java |    5 +++++
 1 file changed, 5 insertions(+)

diff --git a/src/jalview/ext/jmol/JmolCommands.java b/src/jalview/ext/jmol/JmolCommands.java
index acf27f6..0e6cac3 100644
--- a/src/jalview/ext/jmol/JmolCommands.java
+++ b/src/jalview/ext/jmol/JmolCommands.java
@@ -99,6 +99,11 @@ public class JmolCommands
         }
       }
     }
+    {
+      // add final chunk
+      str.add(command.toString());
+      command.setLength(0);
+    }
     return str.toArray(new String[str.size()]);
   }
 
-- 
1.7.10.2