From 0c52d1b40c076f147076ab653d7030307957f07b Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 8 Nov 2006 17:38:13 +0000
Subject: [PATCH] Set description

---
 src/jalview/datamodel/SeqCigar.java |    1 +
 src/jalview/datamodel/Sequence.java |    1 +
 2 files changed, 2 insertions(+)

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index 84da278..74a7812 100644
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -437,6 +437,7 @@ public class SeqCigar
                              ref.getStart() + alseqs[i].start+bounds[0],
                              ref.getStart() + alseqs[i].start+(bounds[2]==0 ? -1 : bounds[2]));
       seqs[i].setDatasetSequence(ref);
+      seqs[i].setDescription(ref.getDescription());
     }
     if (segments!=null) {
       for (int i=0; i<segments.length; i+=3) {
diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index b1a1be2..8031202 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -394,6 +394,7 @@ public class Sequence implements SequenceI
     int nend = findPosition(end) - 1;
     // JBPNote - this is an incomplete copy.
     SequenceI nseq = new Sequence(this.getName(), seq, nstart, nend);
+    nseq.setDescription(description);
     nseq.setDatasetSequence(getDatasetSequence());
     return nseq;
   }
-- 
1.7.10.2