From 0cedccadb3d3c1fd6f3038d8385fdccaa354753e Mon Sep 17 00:00:00 2001 From: jprocter Date: Fri, 19 Jun 2009 09:48:55 +0000 Subject: [PATCH] debug --- src/jalview/analysis/CrossRef.java | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java index 7002f07..d7a3175 100644 --- a/src/jalview/analysis/CrossRef.java +++ b/src/jalview/analysis/CrossRef.java @@ -286,7 +286,7 @@ public class CrossRef // xrefs on this sequence. if (dataset != null) { - found |= searchDataset(dss, xrfs[r], dataset, rseqs, cf); + found |= searchDataset(dss, xrfs[r], dataset, rseqs, cf); // ,false,!dna); if (found) xrfs[r] = null; // we've recovered seqs for this one. } @@ -512,16 +512,16 @@ public class CrossRef } // look for direct or indirect references in common - DBRefEntry[] poss = null, cands = null; + DBRefEntry[] poss = nxt.getDBRef(), cands = null; if (direct) { - cands = jalview.util.DBRefUtils.searchRefs(poss = nxt - .getDBRef(), xrf); + cands = jalview.util.DBRefUtils.searchRefs(poss , xrf); } else { - cands = jalview.util.DBRefUtils.searchRefs(poss = CrossRef - .findXDbRefs(dna, nxt.getDBRef()), xrf); + poss = CrossRef + .findXDbRefs(dna, poss); // + cands = jalview.util.DBRefUtils.searchRefs(poss, xrf); } if (cands != null) { -- 1.7.10.2