From 0df5bf86b6dea4d148a6a8fdd1f4bdce4f475fa8 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Wed, 26 Nov 2014 14:41:18 +0000 Subject: [PATCH] JAL-674 employ the provided DNA/Protein matrix string when mapping from sequence to structure --- src/MCview/PDBfile.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java index e1c4dc5..691fdcd 100755 --- a/src/MCview/PDBfile.java +++ b/src/MCview/PDBfile.java @@ -361,8 +361,8 @@ public class PDBfile extends jalview.io.AlignFile AlignmentI al, String pep, boolean b) { List> replaced = AlignSeq - .replaceMatchingSeqsWith(seqs, annotations, prot, al, - AlignSeq.PEP, false); + .replaceMatchingSeqsWith(seqs, annotations, prot, al, pep, + false); for (PDBChain ch : chains) { int p = 0; -- 1.7.10.2