From 0dfa22e184fa6ff62c45fd884b34f960186d5057 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 23 May 2005 17:47:14 +0000
Subject: [PATCH 1/1] editMenuPadGaps and sortByTree/sort items

---
 src/jalview/jbgui/GAlignFrame.java |   23 +++++++++++++++++++----
 1 file changed, 19 insertions(+), 4 deletions(-)

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index b4cd276..9af1ee9 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -98,10 +98,11 @@ public class GAlignFrame extends JInternalFrame
   JMenuItem modifyPID = new JMenuItem();
   JMenuItem modifyConservation = new JMenuItem();
   protected JMenu sortByTreeMenu = new JMenu();
-  JMenu sort = new JMenu();
+  protected JMenu sort = new JMenu();
   JMenu calculate = new JMenu();
   JMenuItem msaAlignMenuItem = new JMenuItem();
   JMenu jMenu2 = new JMenu();
+  JMenuItem padGapsMenuitem = new JMenuItem();
   public GAlignFrame()
   {
     ButtonGroup colours = new ButtonGroup();
@@ -778,6 +779,14 @@ public class GAlignFrame extends JInternalFrame
       }
     });
     jMenu2.setText("Export");
+    padGapsMenuitem.setText("Pad Gaps");
+    padGapsMenuitem.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        padGapsMenuitem_actionPerformed(e);
+      }
+    });
     alignFrameMenuBar.add(fileMenu);
     alignFrameMenuBar.add(editMenu);
     alignFrameMenuBar.add(searchMenu);
@@ -809,6 +818,8 @@ public class GAlignFrame extends JInternalFrame
     editMenu.add(removeGappedColumnMenuItem);
     editMenu.add(removeAllGapsMenuItem);
     editMenu.add(removeRedundancyMenuItem);
+    editMenu.addSeparator();
+    editMenu.add(padGapsMenuitem);
     searchMenu.add(findMenuItem);
     viewMenu.add(font);
     viewMenu.addSeparator();
@@ -859,7 +870,6 @@ public class GAlignFrame extends JInternalFrame
     jMenu1.add(pasteNew);
     jMenu1.add(pasteThis);
     sort.add(sortIDMenuItem);
-    sort.add(sortByTreeMenu);
     sort.add(sortGroupMenuItem);
     sort.add(sortPairwiseMenuItem);
     calculate.add(averageDistanceTreeMenuItem);
@@ -1227,12 +1237,17 @@ public class GAlignFrame extends JInternalFrame
 
   }
 
-  public void alignFrameMenuBar_ancestorAdded(AncestorEvent event)
+  protected void alignFrameMenuBar_ancestorAdded(AncestorEvent event)
+  {
+
+  }
+
+  protected void saveAlignmentMenu_actionPerformed(ActionEvent e)
   {
 
   }
 
-  public void saveAlignmentMenu_actionPerformed(ActionEvent e)
+  protected void padGapsMenuitem_actionPerformed(ActionEvent e)
   {
 
   }
-- 
1.7.10.2