From 0e9ba580fb2b0d19fc6f116cee31575baa6f19b2 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 24 Feb 2011 08:54:24 +0000 Subject: [PATCH] Edited wiki page PhyloBioRuby through web user interface. --- wiki/PhyloBioRuby.wiki | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki index 08b02e1..e3da58e 100644 --- a/wiki/PhyloBioRuby.wiki +++ b/wiki/PhyloBioRuby.wiki @@ -9,7 +9,7 @@ Tutorial for multiple sequence alignments and phylogenetic methods in !BioRuby - == Multiple Sequence Alignment Input and Output == -=== Reading in a Multiple Sequence Alignments from a File === +=== Reading in a Multiple Sequence Alignment from a File === _... to be done_ @@ -60,6 +60,13 @@ report.align.each { |s| puts s.to_s } # }}} +References: + +* Katoh, Toh (2008) "Recent developments in the MAFFT multiple sequence alignment program" Briefings in Bioinformatics 9:286-298 + +* Katoh, Toh 2010 (2010) "Parallelization of the MAFFT multiple sequence alignment program" Bioinformatics 26:1899-1900 + + === Muscle === @@ -82,6 +89,9 @@ report.align.each { |s| puts s.to_s } # }}} +References: + +* Edgar, R.C. (2004) "MUSCLE: multiple sequence alignment with high accuracy and high throughput" Nucleic Acids Res 32(5):1792-1797 == Manipulating Multiple Sequence Alignments == -- 1.7.10.2