From 0ff82a5d931e19c572695992cd0f59346819db56 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 19 Oct 2011 18:28:47 +0100
Subject: [PATCH] new base class to hold core visualization settings for a
 jalview alignment view

---
 src/jalview/datamodel/AlignmentViewport.java |   22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 src/jalview/datamodel/AlignmentViewport.java

diff --git a/src/jalview/datamodel/AlignmentViewport.java b/src/jalview/datamodel/AlignmentViewport.java
new file mode 100644
index 0000000..7573401
--- /dev/null
+++ b/src/jalview/datamodel/AlignmentViewport.java
@@ -0,0 +1,22 @@
+package jalview.datamodel;
+
+/**
+ * base class holding visualization and analysis attributes for an active alignment view displayed in the GUI
+ * @author jimp
+ *
+ */
+public class AlignmentViewport
+{
+
+  /**
+   * percentage gaps allowed in a column before all amino acid properties should be considered unconserved
+   */
+  int ConsPercGaps = 25; // JBPNote : This should be a scalable property!
+
+
+  public int getConsPercGaps()
+  {
+    return ConsPercGaps;
+  }
+
+}
-- 
1.7.10.2