From 13e9eb31c5b65f9022bc96e7c2d880204bd67c81 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 23 Mar 2005 15:38:53 +0000
Subject: [PATCH] reads MSF files even if PILEUP is missing

---
 src/jalview/io/IdentifyFile.java |    4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index c457b58..4337cf6 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -41,7 +41,7 @@ public class IdentifyFile
         if(data.indexOf("#")==0 || data.length()<1)
           continue;
 
-        if(data.indexOf("PILEUP")>-1)
+        if(data.indexOf("PILEUP")>-1 || data.indexOf("//")>-1)
         {
           reply = "MSF";
           break;
@@ -58,7 +58,7 @@ public class IdentifyFile
         }
         else if(data.indexOf(">")>-1)
         {
-          // could be BLC file
+          // could be BLC file, read next line to confirm
           data = reader.readLine();
           if(data.indexOf(">")>-1)
             reply = "BLC";
-- 
1.7.10.2