From 15ade8926ea520ead84b0dd75c6a3aaac7368bc5 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 5 Apr 2006 16:40:20 +0000
Subject: [PATCH] Maintain feature order

---
 src/jalview/gui/Jalview2XML.java |   12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index db60b8b..d652da2 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -506,18 +506,18 @@ public class Jalview2XML
           jalview.schemabinding.version2.FeatureSettings fs
               = new jalview.schemabinding.version2.FeatureSettings();
 
-          Enumeration e = af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().featureColours.keys();
-          while (e.hasMoreElements())
+          String [] renderOrder =
+              af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().renderOrder;
+          for(int ro=0; ro<renderOrder.length; ro++)
           {
-            String type = e.nextElement().toString();
             Setting setting = new Setting();
-            setting.setType(type);
+            setting.setType(renderOrder[ro]);
             setting.setColour(
-                af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().getColour(type).getRGB()
+                af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().getColour(renderOrder[ro]).getRGB()
                 );
 
             setting.setDisplay(
-                av.featuresDisplayed.containsKey(type)
+                av.featuresDisplayed.containsKey(renderOrder[ro])
                 );
 
             fs.addSetting(setting);
-- 
1.7.10.2