From 15af442616b10419a3ec3eb080f8378879688fd1 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 22 Aug 2005 14:19:25 +0000
Subject: [PATCH] comment on WORD_SEP values

---
 src/jalview/analysis/SequenceIdMatcher.java |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index f4f305b..9d33996 100755
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -146,6 +146,8 @@ public class SequenceIdMatcher
     /**
      * Characters that define the end of a unique sequence ID at
      * the beginning of an arbitrary ID string
+     * JBPNote: This is a heuristic that will fail for arbritrarily extended sequence id's
+     * (like portions of an aligned set of repeats from one sequence)
      */
     private String WORD_SEP="~. |#\\/<>!\"£$%^*)}[@',?";
 
-- 
1.7.10.2