From 16af141746661052f9902fe1ee2872ed07929667 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 27 Apr 2007 16:20:41 +0000
Subject: [PATCH] REmove excessive painting

---
 src/jalview/appletgui/IdPanel.java    |    4 ++--
 src/jalview/appletgui/ScalePanel.java |    6 +++---
 src/jalview/appletgui/SeqPanel.java   |    3 ++-
 3 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java
index fee5dd4..c510803 100755
--- a/src/jalview/appletgui/IdPanel.java
+++ b/src/jalview/appletgui/IdPanel.java
@@ -117,7 +117,7 @@ public class IdPanel
     }
 
     lastid = seq;
-    alignPanel.paintAlignment(true);
+    alignPanel.paintAlignment(false);
   }
 
   public void mouseClicked(MouseEvent e)
@@ -224,7 +224,7 @@ public class IdPanel
       selectSeq(seq);
     }
 
-    alignPanel.paintAlignment(true);
+    alignPanel.paintAlignment(false);
   }
 
   void selectSeq(int seq)
diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java
index 4db8054..a1d0bf7 100755
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -189,7 +189,7 @@ public class ScalePanel
 
     if (!stretchingGroup)
     {
-      ap.paintAlignment(true);
+      ap.paintAlignment(false);
 
       return;
     }
@@ -206,7 +206,7 @@ public class ScalePanel
     }
 
     stretchingGroup = false;
-    ap.paintAlignment(true);
+    ap.paintAlignment(false);
   }
 
   public void mouseDragged(MouseEvent evt)
@@ -274,7 +274,7 @@ public class ScalePanel
         }
       }
 
-      ap.paintAlignment(true);
+      ap.paintAlignment(false);
     }
   }
 
diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 034106d..c56ded6 100755
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -781,7 +781,8 @@ public class SeqPanel
 
 
         if (features[i].featureGroup != null
-            && seqCanvas.fr.featureGroups!=null
+           && seqCanvas.fr.featureGroups!=null
+            && seqCanvas.fr.featureGroups.containsKey(features[i].featureGroup)
             && !((Boolean)seqCanvas.fr.featureGroups.get(features[i].featureGroup)).booleanValue())
           continue;
 
-- 
1.7.10.2