From 17609c2e04aa25bfb73da68317c99c72bd4af8c4 Mon Sep 17 00:00:00 2001 From: jprocter Date: Thu, 8 Dec 2011 17:17:44 +0000 Subject: [PATCH] (JAL-1013) gap character index for each sequence alphabet --- src/jalview/schemes/ResidueProperties.java | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java index a78a079..bc15298 100755 --- a/src/jalview/schemes/ResidueProperties.java +++ b/src/jalview/schemes/ResidueProperties.java @@ -95,6 +95,15 @@ public class ResidueProperties // extend subt. matrices } + /** + * maximum (gap) index for matrices involving protein alphabet + */ + public final static int maxProteinIndex=23; + /** + * maximum (gap) index for matrices involving nucleotide alphabet + */ + public final static int maxNucleotideIndex=10; + static { nucleotideIndex = new int[255]; -- 1.7.10.2