From 178988bd18840c0c95432bf8209c014532337eeb Mon Sep 17 00:00:00 2001 From: tcofoegbu Date: Thu, 24 Mar 2016 15:56:55 +0000 Subject: [PATCH] JAL-1479 Commented out debug sysout's for SiftsClient --- src/jalview/ws/sifts/SiftsClient.java | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java index ef6df43..e04bbb7 100644 --- a/src/jalview/ws/sifts/SiftsClient.java +++ b/src/jalview/ws/sifts/SiftsClient.java @@ -457,7 +457,7 @@ public class SiftsClient implements SiftsClientI { ArrayList omitNonObserved = new ArrayList(); int nonObservedShiftIndex = 0; - System.out.println("Generating mappings for : " + entityId); + // System.out.println("Generating mappings for : " + entityId); Entity entity = null; entity = getEntityById(entityId); String originalSeq = AlignSeq.extractGaps( @@ -492,8 +492,8 @@ public class SiftsClient implements SiftsClientI for (Segment segment : segments) { segStartEnd = segment.getStart() + " - " + segment.getEnd(); - System.out.println("Mappging segments : " + segment.getSegId() + "\\" - + segStartEnd); + // System.out.println("Mapping segments : " + segment.getSegId() + "\\" + // + segStartEnd); List residues = segment.getListResidue().getResidue(); for (Residue residue : residues) { @@ -772,8 +772,8 @@ public class SiftsClient implements SiftsClientI Arrays.sort(keys); int firstIndex = keys[0]; int lastIndex = keys[keys.length - 1]; - System.out.println("Min value " + firstIndex); - System.out.println("Max value " + lastIndex); + // System.out.println("Min value " + firstIndex); + // System.out.println("Max value " + lastIndex); for (int x = firstIndex; x <= lastIndex; x++) { if (!resNumMap.containsKey(x) && !omitNonObserved.contains(x)) @@ -862,8 +862,8 @@ public class SiftsClient implements SiftsClientI ++count; } Arrays.sort(sPojo, Collections.reverseOrder()); - System.out.println("highest matched entity : " + sPojo[0].entityId); - System.out.println("highest matched pid : " + sPojo[0].pid); + // System.out.println("highest matched entity : " + sPojo[0].entityId); + // System.out.println("highest matched pid : " + sPojo[0].pid); if (sPojo[0].entityId != null) { -- 1.7.10.2