From 17fb03228f2fee0369a03b82d9bec86e80e71bf5 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 30 Nov 2005 15:07:09 +0000
Subject: [PATCH] Parse id before showing uniprot link

---
 src/jalview/appletgui/APopupMenu.java |    6 +++++-
 src/jalview/appletgui/IdPanel.java    |    2 ++
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 0435d25..8488dd8 100755
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -97,8 +97,12 @@ public class APopupMenu
         link = links.elementAt(i).toString();
         final String target = link.substring(0, link.indexOf("|"));
         item = new MenuItem(target);
+        String id = seq.getName();
+        if(id.indexOf("|")>-1)
+             id = id.substring(id.lastIndexOf("|")+1);
+
         final String url = link.substring(link.indexOf("|")+1, link.indexOf("$SEQUENCE_ID$"))
-               + seq.getName() +
+               + id +
                link.substring(link.indexOf("$SEQUENCE_ID$") + 13);
 
            item.addActionListener(new java.awt.event.ActionListener()
diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java
index 82fc507..d159a4c 100755
--- a/src/jalview/appletgui/IdPanel.java
+++ b/src/jalview/appletgui/IdPanel.java
@@ -116,6 +116,8 @@ public class IdPanel
     //DEFAULT LINK IS FIRST IN THE LINK LIST
     int seq = av.getIndex(y);
     String id = av.getAlignment().getSequenceAt(seq).getName();
+    if (id.indexOf("|") > -1)
+        id = id.substring(id.lastIndexOf("|") + 1);
 
     String target = links.elementAt(0).toString();
     target = target.substring(0, target.indexOf("|"));
-- 
1.7.10.2