From 18dbee572ff61918cb5939f5f89f14d09e7a5f3f Mon Sep 17 00:00:00 2001
From: kiramt <k.mourao@dundee.ac.uk>
Date: Mon, 26 Feb 2018 10:41:51 +0000
Subject: [PATCH] JAL-2909 Changes to htsjdk import control

---
 utils/checkstyle/import-control.xml |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/utils/checkstyle/import-control.xml b/utils/checkstyle/import-control.xml
index c47aaec..0babda8 100644
--- a/utils/checkstyle/import-control.xml
+++ b/utils/checkstyle/import-control.xml
@@ -37,6 +37,7 @@
 		<subpackage name="datamodel">
 	    	<disallow pkg="jalview.gui"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
+	    	<allow pkg="htsjdk"/>
 			<subpackage name="xdb.embl">
 		    	<allow pkg="org.exolab.castor"/>
 		    </subpackage>
@@ -116,6 +117,7 @@
 	    	<allow pkg="uk.ac.vamsas"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
 	    	<allow pkg="MCview"/>
+	    	<allow pkg="htsjdk.samtools"/>
 		</subpackage>	    
 		   		
 		<subpackage name="javascript">
-- 
1.7.10.2