From 1956c58ae0e53230013c25d6b40a19f99ad5513a Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 24 Feb 2011 08:57:14 +0000 Subject: [PATCH] Edited wiki page PhyloBioRuby through web user interface. --- wiki/PhyloBioRuby.wiki | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki index dfb8ed2..bebd29b 100644 --- a/wiki/PhyloBioRuby.wiki +++ b/wiki/PhyloBioRuby.wiki @@ -50,14 +50,14 @@ require 'bio' # and stores the result in 'report'. options = ['--maxiterate', '1000', '--localpair'] mafft = Bio::MAFFT.new('path/to/mafft', options) -report = mafft.query_align( seqs) +report = mafft.query_align(seqs) # Accesses the actual alignment align = report.alignment # Prints each sequence to the console. -report.align.each { |s| puts s.to_s } -# +align.each { |s| puts s.to_s } + }}} References: @@ -79,14 +79,14 @@ require 'bio' # and stores the result in 'report'. options = ['-quiet', '-maxiters', '64'] muscle = Bio::Muscle.new('path/to/muscle', options) -report = muscle.query_align( seqs) +report = muscle.query_align(seqs) # Accesses the actual alignment align = report.alignment # Prints each sequence to the console. -report.align.each { |s| puts s.to_s } -# +align.each { |s| puts s.to_s } + }}} References: -- 1.7.10.2