From 19fe93b91d4c50834b1a7101da2b1c240c55ae84 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 16 May 2017 11:11:25 +0100
Subject: [PATCH] JAL-2525 put in missing "transcript" feature type

---
 src/jalview/ext/ensembl/EnsemblGene.java |    3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 223e54a..2d4d61a 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -274,7 +274,8 @@ public class EnsemblGene extends EnsemblSeqProxy
      * (it is a sub-type of sequence_variant)    
      */
     String[] soTerms = new String[] {
-        SequenceOntologyI.NMD_TRANSCRIPT_VARIANT, SequenceOntologyI.EXON,
+        SequenceOntologyI.NMD_TRANSCRIPT_VARIANT,
+        SequenceOntologyI.TRANSCRIPT, SequenceOntologyI.EXON,
         SequenceOntologyI.CDS };
     List<SequenceFeature> sfs = gene.getFeatures().getFeaturesByOntology(
             soTerms);
-- 
1.7.10.2